SILENT_MODE BLOCK_FILE jp_t3LTrvO.concise.blc MAX_NSEQ 860 MAX_INPUT_LEN 862 OUTPUT_FILE jp_t3LTrvO.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 210 849 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 850 210 859 H SPACE SUB_CHARS 1 850 210 859 E SPACE SUB_CHARS 1 850 210 859 - SPACE HELIX 4 853 48 COLOUR_TEXT_REGION 4 853 48 853 50 HELIX 54 853 71 COLOUR_TEXT_REGION 54 853 71 853 50 HELIX 84 853 93 COLOUR_TEXT_REGION 84 853 93 853 50 HELIX 111 853 131 COLOUR_TEXT_REGION 111 853 131 853 50 HELIX 135 853 168 COLOUR_TEXT_REGION 135 853 168 853 50 HELIX 170 853 172 COLOUR_TEXT_REGION 170 853 172 853 50 HELIX 178 853 208 COLOUR_TEXT_REGION 178 853 208 853 50 HELIX 4 858 17 COLOUR_TEXT_REGION 4 858 17 858 50 HELIX 20 858 48 COLOUR_TEXT_REGION 20 858 48 858 50 HELIX 54 858 71 COLOUR_TEXT_REGION 54 858 71 858 50 HELIX 84 858 93 COLOUR_TEXT_REGION 84 858 93 858 50 HELIX 111 858 132 COLOUR_TEXT_REGION 111 858 132 858 50 HELIX 135 858 167 COLOUR_TEXT_REGION 135 858 167 858 50 HELIX 178 858 208 COLOUR_TEXT_REGION 178 858 208 858 50 HELIX 3 859 48 COLOUR_TEXT_REGION 3 859 48 859 50 HELIX 54 859 71 COLOUR_TEXT_REGION 54 859 71 859 50 HELIX 84 859 92 COLOUR_TEXT_REGION 84 859 92 859 50 HELIX 111 859 130 COLOUR_TEXT_REGION 111 859 130 859 50 HELIX 135 859 174 COLOUR_TEXT_REGION 135 859 174 859 50 HELIX 178 859 207 COLOUR_TEXT_REGION 178 859 207 859 50