SILENT_MODE BLOCK_FILE jp_d8pPj6M.concise.blc MAX_NSEQ 836 MAX_INPUT_LEN 838 OUTPUT_FILE jp_d8pPj6M.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 76 825 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 826 76 835 H SPACE SUB_CHARS 1 826 76 835 E SPACE SUB_CHARS 1 826 76 835 - SPACE STRAND 13 829 18 COLOUR_TEXT_REGION 13 829 18 829 51 STRAND 23 829 23 COLOUR_TEXT_REGION 23 829 23 829 51 STRAND 26 829 26 COLOUR_TEXT_REGION 26 829 26 829 51 STRAND 43 829 47 COLOUR_TEXT_REGION 43 829 47 829 51 STRAND 54 829 58 COLOUR_TEXT_REGION 54 829 58 829 51 HELIX 29 829 38 COLOUR_TEXT_REGION 29 829 38 829 50 HELIX 61 829 74 COLOUR_TEXT_REGION 61 829 74 829 50 STRAND 11 834 18 COLOUR_TEXT_REGION 11 834 18 834 51 STRAND 26 834 27 COLOUR_TEXT_REGION 26 834 27 834 51 STRAND 43 834 47 COLOUR_TEXT_REGION 43 834 47 834 51 STRAND 54 834 58 COLOUR_TEXT_REGION 54 834 58 834 51 HELIX 29 834 38 COLOUR_TEXT_REGION 29 834 38 834 50 HELIX 62 834 74 COLOUR_TEXT_REGION 62 834 74 834 50 STRAND 13 835 17 COLOUR_TEXT_REGION 13 835 17 835 51 STRAND 23 835 24 COLOUR_TEXT_REGION 23 835 24 835 51 STRAND 26 835 26 COLOUR_TEXT_REGION 26 835 26 835 51 STRAND 43 835 46 COLOUR_TEXT_REGION 43 835 46 835 51 STRAND 54 835 58 COLOUR_TEXT_REGION 54 835 58 835 51 HELIX 29 835 39 COLOUR_TEXT_REGION 29 835 39 835 50 HELIX 60 835 74 COLOUR_TEXT_REGION 60 835 74 835 50