SILENT_MODE
BLOCK_FILE jp_EbhpJci.concise.blc
MAX_NSEQ 641
MAX_INPUT_LEN 643
OUTPUT_FILE jp_EbhpJci.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 62 630   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 631 62 640 H SPACE
SUB_CHARS 1 631 62 640 E SPACE
SUB_CHARS 1 631 62 640 - SPACE
STRAND 3 634 6
COLOUR_TEXT_REGION 3 634 6 634 51
STRAND 11 634 14
COLOUR_TEXT_REGION 11 634 14 634 51
STRAND 35 634 40
COLOUR_TEXT_REGION 35 634 40 634 51
STRAND 43 634 46
COLOUR_TEXT_REGION 43 634 46 634 51
STRAND 50 634 50
COLOUR_TEXT_REGION 50 634 50 634 51
STRAND 56 634 60
COLOUR_TEXT_REGION 56 634 60 634 51
HELIX 20 634 29
COLOUR_TEXT_REGION 20 634 29 634 50
HELIX 31 634 34
COLOUR_TEXT_REGION 31 634 34 634 50
STRAND 3 639 6
COLOUR_TEXT_REGION 3 639 6 639 51
STRAND 11 639 14
COLOUR_TEXT_REGION 11 639 14 639 51
STRAND 35 639 40
COLOUR_TEXT_REGION 35 639 40 639 51
STRAND 44 639 46
COLOUR_TEXT_REGION 44 639 46 639 51
STRAND 56 639 61
COLOUR_TEXT_REGION 56 639 61 639 51
HELIX 20 639 29
COLOUR_TEXT_REGION 20 639 29 639 50
HELIX 31 639 34
COLOUR_TEXT_REGION 31 639 34 639 50
STRAND 3 640 6
COLOUR_TEXT_REGION 3 640 6 640 51
STRAND 11 640 13
COLOUR_TEXT_REGION 11 640 13 640 51
STRAND 34 640 40
COLOUR_TEXT_REGION 34 640 40 640 51
STRAND 43 640 47
COLOUR_TEXT_REGION 43 640 47 640 51
STRAND 49 640 50
COLOUR_TEXT_REGION 49 640 50 640 51
STRAND 56 640 60
COLOUR_TEXT_REGION 56 640 60 640 51
HELIX 20 640 27
COLOUR_TEXT_REGION 20 640 27 640 50
HELIX 32 640 33
COLOUR_TEXT_REGION 32 640 33 640 50