SILENT_MODE BLOCK_FILE jp_RtgThar.concise.blc MAX_NSEQ 775 MAX_INPUT_LEN 777 OUTPUT_FILE jp_RtgThar.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 162 764 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 765 162 774 H SPACE SUB_CHARS 1 765 162 774 E SPACE SUB_CHARS 1 765 162 774 - SPACE STRAND 29 768 34 COLOUR_TEXT_REGION 29 768 34 768 51 STRAND 40 768 43 COLOUR_TEXT_REGION 40 768 43 768 51 STRAND 73 768 77 COLOUR_TEXT_REGION 73 768 77 768 51 STRAND 97 768 101 COLOUR_TEXT_REGION 97 768 101 768 51 STRAND 107 768 111 COLOUR_TEXT_REGION 107 768 111 768 51 STRAND 116 768 119 COLOUR_TEXT_REGION 116 768 119 768 51 STRAND 135 768 138 COLOUR_TEXT_REGION 135 768 138 768 51 STRAND 144 768 145 COLOUR_TEXT_REGION 144 768 145 768 51 STRAND 154 768 159 COLOUR_TEXT_REGION 154 768 159 768 51 HELIX 3 768 24 COLOUR_TEXT_REGION 3 768 24 768 50 HELIX 52 768 68 COLOUR_TEXT_REGION 52 768 68 768 50 HELIX 79 768 96 COLOUR_TEXT_REGION 79 768 96 768 50 HELIX 133 768 134 COLOUR_TEXT_REGION 133 768 134 768 50 STRAND 29 773 34 COLOUR_TEXT_REGION 29 773 34 773 51 STRAND 40 773 44 COLOUR_TEXT_REGION 40 773 44 773 51 STRAND 72 773 77 COLOUR_TEXT_REGION 72 773 77 773 51 STRAND 96 773 101 COLOUR_TEXT_REGION 96 773 101 773 51 STRAND 107 773 112 COLOUR_TEXT_REGION 107 773 112 773 51 STRAND 116 773 119 COLOUR_TEXT_REGION 116 773 119 773 51 STRAND 134 773 138 COLOUR_TEXT_REGION 134 773 138 773 51 STRAND 143 773 146 COLOUR_TEXT_REGION 143 773 146 773 51 STRAND 155 773 159 COLOUR_TEXT_REGION 155 773 159 773 51 HELIX 3 773 24 COLOUR_TEXT_REGION 3 773 24 773 50 HELIX 52 773 68 COLOUR_TEXT_REGION 52 773 68 773 50 HELIX 79 773 88 COLOUR_TEXT_REGION 79 773 88 773 50 STRAND 30 774 34 COLOUR_TEXT_REGION 30 774 34 774 51 STRAND 40 774 43 COLOUR_TEXT_REGION 40 774 43 774 51 STRAND 73 774 76 COLOUR_TEXT_REGION 73 774 76 774 51 STRAND 108 774 110 COLOUR_TEXT_REGION 108 774 110 774 51 STRAND 117 774 117 COLOUR_TEXT_REGION 117 774 117 774 51 STRAND 154 774 160 COLOUR_TEXT_REGION 154 774 160 774 51 HELIX 3 774 24 COLOUR_TEXT_REGION 3 774 24 774 50 HELIX 52 774 68 COLOUR_TEXT_REGION 52 774 68 774 50 HELIX 77 774 101 COLOUR_TEXT_REGION 77 774 101 774 50 HELIX 131 774 138 COLOUR_TEXT_REGION 131 774 138 774 50