SILENT_MODE BLOCK_FILE jp_C3EmotV.concise.blc MAX_NSEQ 1066 MAX_INPUT_LEN 1068 OUTPUT_FILE jp_C3EmotV.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 235 1055 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1056 235 1065 H SPACE SUB_CHARS 1 1056 235 1065 E SPACE SUB_CHARS 1 1056 235 1065 - SPACE STRAND 5 1059 9 COLOUR_TEXT_REGION 5 1059 9 1059 51 STRAND 14 1059 17 COLOUR_TEXT_REGION 14 1059 17 1059 51 STRAND 32 1059 35 COLOUR_TEXT_REGION 32 1059 35 1059 51 STRAND 44 1059 47 COLOUR_TEXT_REGION 44 1059 47 1059 51 STRAND 52 1059 56 COLOUR_TEXT_REGION 52 1059 56 1059 51 STRAND 61 1059 64 COLOUR_TEXT_REGION 61 1059 64 1059 51 STRAND 80 1059 83 COLOUR_TEXT_REGION 80 1059 83 1059 51 STRAND 91 1059 94 COLOUR_TEXT_REGION 91 1059 94 1059 51 STRAND 99 1059 104 COLOUR_TEXT_REGION 99 1059 104 1059 51 STRAND 108 1059 112 COLOUR_TEXT_REGION 108 1059 112 1059 51 STRAND 122 1059 122 COLOUR_TEXT_REGION 122 1059 122 1059 51 STRAND 127 1059 129 COLOUR_TEXT_REGION 127 1059 129 1059 51 STRAND 137 1059 141 COLOUR_TEXT_REGION 137 1059 141 1059 51 STRAND 146 1059 151 COLOUR_TEXT_REGION 146 1059 151 1059 51 STRAND 155 1059 159 COLOUR_TEXT_REGION 155 1059 159 1059 51 STRAND 175 1059 176 COLOUR_TEXT_REGION 175 1059 176 1059 51 STRAND 185 1059 188 COLOUR_TEXT_REGION 185 1059 188 1059 51 STRAND 193 1059 197 COLOUR_TEXT_REGION 193 1059 197 1059 51 STRAND 202 1059 205 COLOUR_TEXT_REGION 202 1059 205 1059 51 STRAND 221 1059 222 COLOUR_TEXT_REGION 221 1059 222 1059 51 STRAND 5 1064 9 COLOUR_TEXT_REGION 5 1064 9 1064 51 STRAND 14 1064 17 COLOUR_TEXT_REGION 14 1064 17 1064 51 STRAND 33 1064 35 COLOUR_TEXT_REGION 33 1064 35 1064 51 STRAND 44 1064 47 COLOUR_TEXT_REGION 44 1064 47 1064 51 STRAND 52 1064 56 COLOUR_TEXT_REGION 52 1064 56 1064 51 STRAND 61 1064 64 COLOUR_TEXT_REGION 61 1064 64 1064 51 STRAND 80 1064 82 COLOUR_TEXT_REGION 80 1064 82 1064 51 STRAND 91 1064 94 COLOUR_TEXT_REGION 91 1064 94 1064 51 STRAND 99 1064 104 COLOUR_TEXT_REGION 99 1064 104 1064 51 STRAND 108 1064 112 COLOUR_TEXT_REGION 108 1064 112 1064 51 STRAND 137 1064 141 COLOUR_TEXT_REGION 137 1064 141 1064 51 STRAND 146 1064 151 COLOUR_TEXT_REGION 146 1064 151 1064 51 STRAND 156 1064 159 COLOUR_TEXT_REGION 156 1064 159 1064 51 STRAND 175 1064 176 COLOUR_TEXT_REGION 175 1064 176 1064 51 STRAND 185 1064 188 COLOUR_TEXT_REGION 185 1064 188 1064 51 STRAND 193 1064 197 COLOUR_TEXT_REGION 193 1064 197 1064 51 STRAND 202 1064 204 COLOUR_TEXT_REGION 202 1064 204 1064 51 STRAND 221 1064 222 COLOUR_TEXT_REGION 221 1064 222 1064 51 HELIX 230 1064 231 COLOUR_TEXT_REGION 230 1064 231 1064 50 STRAND 5 1065 10 COLOUR_TEXT_REGION 5 1065 10 1065 51 STRAND 14 1065 17 COLOUR_TEXT_REGION 14 1065 17 1065 51 STRAND 26 1065 28 COLOUR_TEXT_REGION 26 1065 28 1065 51 STRAND 32 1065 36 COLOUR_TEXT_REGION 32 1065 36 1065 51 STRAND 44 1065 47 COLOUR_TEXT_REGION 44 1065 47 1065 51 STRAND 52 1065 57 COLOUR_TEXT_REGION 52 1065 57 1065 51 STRAND 61 1065 64 COLOUR_TEXT_REGION 61 1065 64 1065 51 STRAND 79 1065 83 COLOUR_TEXT_REGION 79 1065 83 1065 51 STRAND 91 1065 94 COLOUR_TEXT_REGION 91 1065 94 1065 51 STRAND 99 1065 103 COLOUR_TEXT_REGION 99 1065 103 1065 51 STRAND 108 1065 111 COLOUR_TEXT_REGION 108 1065 111 1065 51 STRAND 120 1065 123 COLOUR_TEXT_REGION 120 1065 123 1065 51 STRAND 126 1065 129 COLOUR_TEXT_REGION 126 1065 129 1065 51 STRAND 138 1065 141 COLOUR_TEXT_REGION 138 1065 141 1065 51 STRAND 146 1065 150 COLOUR_TEXT_REGION 146 1065 150 1065 51 STRAND 155 1065 159 COLOUR_TEXT_REGION 155 1065 159 1065 51 STRAND 174 1065 177 COLOUR_TEXT_REGION 174 1065 177 1065 51 STRAND 184 1065 188 COLOUR_TEXT_REGION 184 1065 188 1065 51 STRAND 193 1065 197 COLOUR_TEXT_REGION 193 1065 197 1065 51 STRAND 202 1065 205 COLOUR_TEXT_REGION 202 1065 205 1065 51 STRAND 222 1065 223 COLOUR_TEXT_REGION 222 1065 223 1065 51