SILENT_MODE
BLOCK_FILE jp_iDSFAmO.concise.blc
MAX_NSEQ 461
MAX_INPUT_LEN 463
OUTPUT_FILE jp_iDSFAmO.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 98 450   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 451 98 460 H SPACE
SUB_CHARS 1 451 98 460 E SPACE
SUB_CHARS 1 451 98 460 - SPACE
STRAND 15 454 20
COLOUR_TEXT_REGION 15 454 20 454 51
STRAND 28 454 36
COLOUR_TEXT_REGION 28 454 36 454 51
STRAND 40 454 45
COLOUR_TEXT_REGION 40 454 45 454 51
STRAND 49 454 53
COLOUR_TEXT_REGION 49 454 53 454 51
STRAND 58 454 63
COLOUR_TEXT_REGION 58 454 63 454 51
STRAND 66 454 71
COLOUR_TEXT_REGION 66 454 71 454 51
STRAND 74 454 75
COLOUR_TEXT_REGION 74 454 75 454 51
HELIX 7 454 8
COLOUR_TEXT_REGION 7 454 8 454 50
HELIX 80 454 91
COLOUR_TEXT_REGION 80 454 91 454 50
STRAND 15 459 20
COLOUR_TEXT_REGION 15 459 20 459 51
STRAND 29 459 35
COLOUR_TEXT_REGION 29 459 35 459 51
STRAND 40 459 45
COLOUR_TEXT_REGION 40 459 45 459 51
STRAND 49 459 53
COLOUR_TEXT_REGION 49 459 53 459 51
STRAND 58 459 63
COLOUR_TEXT_REGION 58 459 63 459 51
STRAND 66 459 71
COLOUR_TEXT_REGION 66 459 71 459 51
STRAND 74 459 75
COLOUR_TEXT_REGION 74 459 75 459 51
HELIX 36 459 36
COLOUR_TEXT_REGION 36 459 36 459 50
HELIX 80 459 90
COLOUR_TEXT_REGION 80 459 90 459 50
STRAND 15 460 20
COLOUR_TEXT_REGION 15 460 20 460 51
STRAND 27 460 36
COLOUR_TEXT_REGION 27 460 36 460 51
STRAND 40 460 45
COLOUR_TEXT_REGION 40 460 45 460 51
STRAND 49 460 53
COLOUR_TEXT_REGION 49 460 53 460 51
STRAND 58 460 63
COLOUR_TEXT_REGION 58 460 63 460 51
STRAND 66 460 71
COLOUR_TEXT_REGION 66 460 71 460 51
HELIX 3 460 11
COLOUR_TEXT_REGION 3 460 11 460 50
HELIX 79 460 91
COLOUR_TEXT_REGION 79 460 91 460 50