SILENT_MODE BLOCK_FILE jp_fywToBC.concise.blc MAX_NSEQ 635 MAX_INPUT_LEN 637 OUTPUT_FILE jp_fywToBC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 164 624 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 625 164 634 H SPACE SUB_CHARS 1 625 164 634 E SPACE SUB_CHARS 1 625 164 634 - SPACE STRAND 45 628 51 COLOUR_TEXT_REGION 45 628 51 628 51 STRAND 73 628 81 COLOUR_TEXT_REGION 73 628 81 628 51 STRAND 86 628 93 COLOUR_TEXT_REGION 86 628 93 628 51 STRAND 129 628 133 COLOUR_TEXT_REGION 129 628 133 628 51 STRAND 140 628 146 COLOUR_TEXT_REGION 140 628 146 628 51 STRAND 151 628 156 COLOUR_TEXT_REGION 151 628 156 628 51 HELIX 22 628 28 COLOUR_TEXT_REGION 22 628 28 628 50 HELIX 33 628 40 COLOUR_TEXT_REGION 33 628 40 628 50 HELIX 59 628 65 COLOUR_TEXT_REGION 59 628 65 628 50 HELIX 105 628 107 COLOUR_TEXT_REGION 105 628 107 628 50 HELIX 112 628 119 COLOUR_TEXT_REGION 112 628 119 628 50 STRAND 45 633 51 COLOUR_TEXT_REGION 45 633 51 633 51 STRAND 73 633 81 COLOUR_TEXT_REGION 73 633 81 633 51 STRAND 86 633 93 COLOUR_TEXT_REGION 86 633 93 633 51 STRAND 129 633 133 COLOUR_TEXT_REGION 129 633 133 633 51 STRAND 140 633 146 COLOUR_TEXT_REGION 140 633 146 633 51 STRAND 150 633 156 COLOUR_TEXT_REGION 150 633 156 633 51 HELIX 22 633 28 COLOUR_TEXT_REGION 22 633 28 633 50 HELIX 33 633 40 COLOUR_TEXT_REGION 33 633 40 633 50 HELIX 59 633 64 COLOUR_TEXT_REGION 59 633 64 633 50 HELIX 112 633 118 COLOUR_TEXT_REGION 112 633 118 633 50 STRAND 45 634 51 COLOUR_TEXT_REGION 45 634 51 634 51 STRAND 73 634 81 COLOUR_TEXT_REGION 73 634 81 634 51 STRAND 86 634 93 COLOUR_TEXT_REGION 86 634 93 634 51 STRAND 129 634 133 COLOUR_TEXT_REGION 129 634 133 634 51 STRAND 139 634 145 COLOUR_TEXT_REGION 139 634 145 634 51 STRAND 151 634 156 COLOUR_TEXT_REGION 151 634 156 634 51 HELIX 22 634 28 COLOUR_TEXT_REGION 22 634 28 634 50 HELIX 33 634 41 COLOUR_TEXT_REGION 33 634 41 634 50 HELIX 59 634 65 COLOUR_TEXT_REGION 59 634 65 634 50 HELIX 103 634 107 COLOUR_TEXT_REGION 103 634 107 634 50 HELIX 113 634 119 COLOUR_TEXT_REGION 113 634 119 634 50