SILENT_MODE
BLOCK_FILE jp_MHHqYAf.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_MHHqYAf.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 102 26   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 27 102 36 H SPACE
SUB_CHARS 1 27 102 36 E SPACE
SUB_CHARS 1 27 102 36 - SPACE
STRAND 5 30 12
COLOUR_TEXT_REGION 5 30 12 30 51
STRAND 18 30 24
COLOUR_TEXT_REGION 18 30 24 30 51
STRAND 37 30 41
COLOUR_TEXT_REGION 37 30 41 30 51
STRAND 56 30 60
COLOUR_TEXT_REGION 56 30 60 30 51
STRAND 63 30 71
COLOUR_TEXT_REGION 63 30 71 30 51
STRAND 77 30 83
COLOUR_TEXT_REGION 77 30 83 30 51
STRAND 88 30 90
COLOUR_TEXT_REGION 88 30 90 30 51
STRAND 95 30 101
COLOUR_TEXT_REGION 95 30 101 30 51
HELIX 28 30 30
COLOUR_TEXT_REGION 28 30 30 30 50
HELIX 48 30 49
COLOUR_TEXT_REGION 48 30 49 30 50
STRAND 5 35 12
COLOUR_TEXT_REGION 5 35 12 35 51
STRAND 18 35 24
COLOUR_TEXT_REGION 18 35 24 35 51
STRAND 37 35 41
COLOUR_TEXT_REGION 37 35 41 35 51
STRAND 56 35 60
COLOUR_TEXT_REGION 56 35 60 35 51
STRAND 63 35 71
COLOUR_TEXT_REGION 63 35 71 35 51
STRAND 77 35 82
COLOUR_TEXT_REGION 77 35 82 35 51
STRAND 88 35 90
COLOUR_TEXT_REGION 88 35 90 35 51
STRAND 95 35 100
COLOUR_TEXT_REGION 95 35 100 35 51
HELIX 76 35 76
COLOUR_TEXT_REGION 76 35 76 35 50
STRAND 5 36 12
COLOUR_TEXT_REGION 5 36 12 36 51
STRAND 18 36 24
COLOUR_TEXT_REGION 18 36 24 36 51
STRAND 37 36 41
COLOUR_TEXT_REGION 37 36 41 36 51
STRAND 56 36 60
COLOUR_TEXT_REGION 56 36 60 36 51
STRAND 63 36 71
COLOUR_TEXT_REGION 63 36 71 36 51
STRAND 77 36 83
COLOUR_TEXT_REGION 77 36 83 36 51
STRAND 88 36 90
COLOUR_TEXT_REGION 88 36 90 36 51
STRAND 95 36 101
COLOUR_TEXT_REGION 95 36 101 36 51
HELIX 27 36 32
COLOUR_TEXT_REGION 27 36 32 36 50
HELIX 45 36 45
COLOUR_TEXT_REGION 45 36 45 36 50
HELIX 47 36 50
COLOUR_TEXT_REGION 47 36 50 36 50