QUERY           : GTPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLRLLYKNAYSTVSCGNYGVLCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKIWR : QUERY 
UniRef90_Q80PB1 : GTIDISVHVTLDKEKKNVLSFIVREEYHLKKLAVGAYSINILDTQLLNNLSLYQCKTIACGDYVIVYNFVENSNR-INVILFNIKPTILKKGNCIFKI---- : UniRef90_Q80PB1
UniRef90_W5VL52 : GTVNILVYATLDQDDDNILSFIVQDEYHLKKLAIGAYSLNILDTRLLNNLWRYHCATISCGNYVICHNFTEDGN--LNVILFNTRPTILKKGVCIFKIIY-- : UniRef90_W5VL52
UniRef90_C3TWY1 : GTVDISVYTILDKDDKKVLSFIVQDEYHLKKLAIGAYTLNILDTQLLSDLMERDCVTVSCGDFVVCHNFTELANCGLNVILFNIKPTILKKGVCIFKIIY-- : UniRef90_C3TWY1
UniRef90_V9LSY6 : STPDIVVNVEPADNDVDVLNFIIGNEYHLKRLGIGAHAIKVISSPHLERLHRNHYCTISCGTYAILCNLVHGSEYDVETILFNRSETRLDKGGVLFKTKIY- : UniRef90_V9LSY6
UniRef90_D4N2C3 : -TVNIAAYVTLDKEERHTLSFIVQDEYHLKKLTVGAYNINVLDTQLLDGLLKKRCYTIVCGNYNVIYNFTE--EKKLRVMLFNASPIVLKKHSCIFKIVV-- : UniRef90_D4N2C3
UniRef90_Q0IL26 : -TVDIAVYVSMDDEDRNVLSFIVQDECHLKKLAIGAYALKILDTKLLQSLGERKCIVVSGGDYVIVHNI--NEANGINAILFNKNPIKLHKGMCLFKII--- : UniRef90_Q0IL26
UniRef90_S5MKW0 : -TSDIVVKARVADDDGMVLEFEAENEHCLMK---GAHDVRVIASPELDALHNGPYNEITLGDYTFHYNLIDSDRFGAQVMLFVKRN-NIKISGAVFRLKVW- : UniRef90_S5MKW0
UniRef90_B5X072 : GTVDIATYVVQDREPEKTLSFVVQDEYHLKKLAVGAYCVNILDTRLLSNLHNKQCATIACGYFVVTYN--QNETGGINAILLNTRPTILKKGSCLFKISYY- : UniRef90_B5X072
UniRef90_Q4KT00 : GTVDIAVYVTLDKEDENILSFIVQDEYHLKKLAVGAYNLNILDTQLLAKLIQNQSSTIVGGDYVVVYNF--NMSNNLNVILFNIKPTILKKGACIFKIVY-- : UniRef90_Q4KT00
UniRef90_Q2NP03 : -TSDIVVRARVEDDDNTVLEFEAENEHRLMK---GAHEVHVVVSPELDALHNGPYNEITLGDYTFHYNLMESNRFGAQVMLFVKKDDI-KIAGPVFRLHVW- : UniRef90_Q2NP03
UniRef90_Q0N426 : GTVNIAVYVTHEKDNNDVLSFIVRDEYHLKKLAVGAYSLNILDSHHLKIMHDAVKSTVSCGDFVVVYNYTEMSKN-LNAILFNAKPTILKKDGVIFKVIIY- : UniRef90_Q0N426
UniRef90_A0EYW8 : GTVSIAVYTIVDKEDYNILSFIVQDEYHLKKLAVGAYNLNILDTQLLNTLEESSYHVVVCGDFVITHNIVDRPNTKLNVILFNCKPVVLNKSDCIFKIVY-- : UniRef90_A0EYW8
UniRef90_Q06KI7 : -TSDIVVRARVASDGETVLEFGAENEHRLMK---GAHDVRIMPSDELEALHDSPHTVITCGEYTVEFNLSSRDRREAQALLSVKRDDVLVSGG-VFRLKLW- : UniRef90_Q06KI7
UniRef90_M1JNW8 : GTVDIAVDVSLDDNDKKVLSFIVQDECHLKKLAIGAYAINVIDSNKIKLLNDGSHKIVACGEFLIACN--ENESNSINAILFNKNCVTLKKGVCIFKIHY-- : UniRef90_M1JNW8
UniRef90_Q91GH9 : -TSDIVVNARFVDTDEDLLKFFTDKEQRLMR---GAHDVHVVPSSELEALHNGAYSKFTNGNYTVDVNLLKNDHRAVQVMLF-AKEDNVILNDVVFEIKVW- : UniRef90_Q91GH9
UniRef90_B6S2J8 : ----ISVSVMLTKKNENVLSFTVNDETHLKQLTCGAYHLKIVETPLLDPLINHYYAPQVFGDYTVIYN-VDANSRQVKMILFNITSTVFKRDSVIFQIVY-- : UniRef90_B6S2J8
UniRef90_Q6QXL3 : --DSIIIYPVLEEEQ---IMFKVKEDYNLQKLSIGAYKLQILESEKLDHLKDIHHHIVVCNNYLVVHNAVEGD--AMSAVLILLDSVVLKKDQNIF------ : UniRef90_Q6QXL3
UniRef90_Q9DVU8 : -TDMIGVYPVFLDDK---IDFKVDNEYHLQKQGKGAYAVSVTNNDKIS----RGTLTVESADYNVVYNYLSSGD-GISVLLIIKKPISFKAHDTVFSISL-- : UniRef90_Q9DVU8
UniRef90_Q9PYS5 : -TDNIVLYPILED---NRITLAVKEEYFLQKVGVGAHRVTVLESEQLDHLHYTQHHIVGC---LLLHNCY--SEGGITAVLIVTEPFKITKNSVL------- : UniRef90_Q9PYS5
UniRef90_K4EQF2 : GAESIVLCAEIANDKVK---FVTKRDYNLQKLGVGAYKLEFDDANELD------TRPQVCDDFVVVVNKTAN--NALVGILITNAEMNLDKNSPIFEL---- : UniRef90_K4EQF2
UniRef90_A5IZU5 : -TDTIVLYPILENEQ---ITLKVKHDYRLHKLNVSVFKLRVENNNLLSHLTDIHHQILTDLDNVIVLH-TCCSDKGLNIALMVLNDLVLNKDDILCRIVY-- : UniRef90_A5IZU5
UniRef90_Q7T5K0 : --DNILVYYE---RDNDICIFKAKNEYRLEKLGIPAYKNKYIDYTEGDEFSDVTNS--SSNDYLILLNSCPNGLVGLLIAL--KNNIIISKNQVLFSKKL-- : UniRef90_Q7T5K0

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------10 :
OrigSeq         : GTPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLRLLYKNAYSTVSCGNYGVLCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKIWR : OrigSeq

Jnet            : ----EEEEEEEE-----EEEEEEE---HHH------EEEEE------HH------EEEEE--EEEEEEEEE-----EEEEEEE----EEE----EEEEEEE- : Jnet
jhmm            : ----EEEEEEEE-----EEEEEEE------------EEEEE--------------EEEEE--EEEEEEEEE----HEEEEEE-----EEE----EEEEEE-- : jhmm
jpssm           : ----EEEEEEEE-----EEEEEEE--HHHHHH----EEEEE---H-HHHH-----EEEEE--EEEEEEEEE-----EEEEEEE----EEE----EEEEEEE- : jpssm

Lupas 14        : ------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25         : ----BBBBB-B------BB-BBB---BBB--BBBBBB-B-BB----B--BB---BBBBBBBBBBBBBBBB------BBBBBBBB--B-B----BBB-B-B-- : Jnet_25
Jnet_5          : ----B-B-B---------B-B-B-----B-----BB--B-B-----B--B-------B-B--BBBBBBB-------B-BBBBB-----B-----BB-B---- : Jnet_5
Jnet_0          : ----------------------------------------------------------------B-------------B-B--------------------- : Jnet_0
Jnet Rel        : 999658999871588855888750211220132574345634631001023788368985465899975515887116889833773686377078998708 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.