SILENT_MODE
BLOCK_FILE jp_pxsLjQx.concise.blc
MAX_NSEQ 237
MAX_INPUT_LEN 239
OUTPUT_FILE jp_pxsLjQx.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 84 226   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 227 84 236 H SPACE
SUB_CHARS 1 227 84 236 E SPACE
SUB_CHARS 1 227 84 236 - SPACE
STRAND 61 230 66
COLOUR_TEXT_REGION 61 230 66 230 51
STRAND 72 230 77
COLOUR_TEXT_REGION 72 230 77 230 51
STRAND 79 230 82
COLOUR_TEXT_REGION 79 230 82 230 51
HELIX 16 230 31
COLOUR_TEXT_REGION 16 230 31 230 50
HELIX 46 230 56
COLOUR_TEXT_REGION 46 230 56 230 50
STRAND 61 235 66
COLOUR_TEXT_REGION 61 235 66 235 51
STRAND 72 235 80
COLOUR_TEXT_REGION 72 235 80 235 51
HELIX 16 235 31
COLOUR_TEXT_REGION 16 235 31 235 50
HELIX 46 235 56
COLOUR_TEXT_REGION 46 235 56 235 50
STRAND 38 236 38
COLOUR_TEXT_REGION 38 236 38 236 51
STRAND 61 236 66
COLOUR_TEXT_REGION 61 236 66 236 51
STRAND 72 236 76
COLOUR_TEXT_REGION 72 236 76 236 51
STRAND 79 236 82
COLOUR_TEXT_REGION 79 236 82 236 51
HELIX 16 236 31
COLOUR_TEXT_REGION 16 236 31 236 50
HELIX 46 236 56
COLOUR_TEXT_REGION 46 236 56 236 50