SILENT_MODE
BLOCK_FILE jp_ouTjPDL.concise.blc
MAX_NSEQ 210
MAX_INPUT_LEN 212
OUTPUT_FILE jp_ouTjPDL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 65 199   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 200 65 209 H SPACE
SUB_CHARS 1 200 65 209 E SPACE
SUB_CHARS 1 200 65 209 - SPACE
STRAND 6 203 8
COLOUR_TEXT_REGION 6 203 8 203 51
STRAND 43 203 44
COLOUR_TEXT_REGION 43 203 44 203 51
HELIX 18 203 26
COLOUR_TEXT_REGION 18 203 26 203 50
HELIX 32 203 38
COLOUR_TEXT_REGION 32 203 38 203 50
HELIX 49 203 50
COLOUR_TEXT_REGION 49 203 50 203 50
HELIX 54 203 61
COLOUR_TEXT_REGION 54 203 61 203 50
STRAND 6 208 8
COLOUR_TEXT_REGION 6 208 8 208 51
HELIX 18 208 26
COLOUR_TEXT_REGION 18 208 26 208 50
HELIX 32 208 38
COLOUR_TEXT_REGION 32 208 38 208 50
HELIX 43 208 44
COLOUR_TEXT_REGION 43 208 44 208 50
HELIX 47 208 50
COLOUR_TEXT_REGION 47 208 50 208 50
HELIX 54 208 61
COLOUR_TEXT_REGION 54 208 61 208 50
STRAND 7 209 7
COLOUR_TEXT_REGION 7 209 7 209 51
STRAND 43 209 45
COLOUR_TEXT_REGION 43 209 45 209 51
STRAND 50 209 50
COLOUR_TEXT_REGION 50 209 50 209 51
HELIX 18 209 26
COLOUR_TEXT_REGION 18 209 26 209 50
HELIX 34 209 38
COLOUR_TEXT_REGION 34 209 38 209 50
HELIX 53 209 61
COLOUR_TEXT_REGION 53 209 61 209 50