SILENT_MODE BLOCK_FILE jp_8sWPCF4.concise.blc MAX_NSEQ 623 MAX_INPUT_LEN 625 OUTPUT_FILE jp_8sWPCF4.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 301 612 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 613 301 622 H SPACE SUB_CHARS 1 613 301 622 E SPACE SUB_CHARS 1 613 301 622 - SPACE STRAND 39 616 44 COLOUR_TEXT_REGION 39 616 44 616 51 STRAND 66 616 70 COLOUR_TEXT_REGION 66 616 70 616 51 STRAND 81 616 86 COLOUR_TEXT_REGION 81 616 86 616 51 STRAND 108 616 113 COLOUR_TEXT_REGION 108 616 113 616 51 STRAND 124 616 127 COLOUR_TEXT_REGION 124 616 127 616 51 STRAND 181 616 185 COLOUR_TEXT_REGION 181 616 185 616 51 STRAND 220 616 223 COLOUR_TEXT_REGION 220 616 223 616 51 STRAND 229 616 232 COLOUR_TEXT_REGION 229 616 232 616 51 STRAND 256 616 260 COLOUR_TEXT_REGION 256 616 260 616 51 HELIX 2 616 19 COLOUR_TEXT_REGION 2 616 19 616 50 HELIX 24 616 33 COLOUR_TEXT_REGION 24 616 33 616 50 HELIX 47 616 60 COLOUR_TEXT_REGION 47 616 60 616 50 HELIX 91 616 103 COLOUR_TEXT_REGION 91 616 103 616 50 HELIX 134 616 176 COLOUR_TEXT_REGION 134 616 176 616 50 HELIX 190 616 205 COLOUR_TEXT_REGION 190 616 205 616 50 HELIX 239 616 252 COLOUR_TEXT_REGION 239 616 252 616 50 HELIX 266 616 283 COLOUR_TEXT_REGION 266 616 283 616 50 HELIX 293 616 299 COLOUR_TEXT_REGION 293 616 299 616 50 STRAND 39 621 44 COLOUR_TEXT_REGION 39 621 44 621 51 STRAND 66 621 70 COLOUR_TEXT_REGION 66 621 70 621 51 STRAND 81 621 86 COLOUR_TEXT_REGION 81 621 86 621 51 STRAND 107 621 112 COLOUR_TEXT_REGION 107 621 112 621 51 STRAND 125 621 127 COLOUR_TEXT_REGION 125 621 127 621 51 STRAND 181 621 185 COLOUR_TEXT_REGION 181 621 185 621 51 STRAND 220 621 223 COLOUR_TEXT_REGION 220 621 223 621 51 STRAND 229 621 233 COLOUR_TEXT_REGION 229 621 233 621 51 STRAND 256 621 260 COLOUR_TEXT_REGION 256 621 260 621 51 HELIX 2 621 20 COLOUR_TEXT_REGION 2 621 20 621 50 HELIX 24 621 33 COLOUR_TEXT_REGION 24 621 33 621 50 HELIX 47 621 60 COLOUR_TEXT_REGION 47 621 60 621 50 HELIX 92 621 103 COLOUR_TEXT_REGION 92 621 103 621 50 HELIX 134 621 177 COLOUR_TEXT_REGION 134 621 177 621 50 HELIX 190 621 206 COLOUR_TEXT_REGION 190 621 206 621 50 HELIX 239 621 252 COLOUR_TEXT_REGION 239 621 252 621 50 HELIX 268 621 283 COLOUR_TEXT_REGION 268 621 283 621 50 HELIX 295 621 296 COLOUR_TEXT_REGION 295 621 296 621 50 HELIX 298 621 298 COLOUR_TEXT_REGION 298 621 298 621 50 STRAND 39 622 44 COLOUR_TEXT_REGION 39 622 44 622 51 STRAND 66 622 70 COLOUR_TEXT_REGION 66 622 70 622 51 STRAND 81 622 86 COLOUR_TEXT_REGION 81 622 86 622 51 STRAND 108 622 113 COLOUR_TEXT_REGION 108 622 113 622 51 STRAND 124 622 127 COLOUR_TEXT_REGION 124 622 127 622 51 STRAND 182 622 184 COLOUR_TEXT_REGION 182 622 184 622 51 STRAND 208 622 208 COLOUR_TEXT_REGION 208 622 208 622 51 STRAND 228 622 232 COLOUR_TEXT_REGION 228 622 232 622 51 STRAND 256 622 260 COLOUR_TEXT_REGION 256 622 260 622 51 HELIX 2 622 18 COLOUR_TEXT_REGION 2 622 18 622 50 HELIX 23 622 34 COLOUR_TEXT_REGION 23 622 34 622 50 HELIX 47 622 60 COLOUR_TEXT_REGION 47 622 60 622 50 HELIX 91 622 104 COLOUR_TEXT_REGION 91 622 104 622 50 HELIX 134 622 150 COLOUR_TEXT_REGION 134 622 150 622 50 HELIX 156 622 163 COLOUR_TEXT_REGION 156 622 163 622 50 HELIX 166 622 175 COLOUR_TEXT_REGION 166 622 175 622 50 HELIX 189 622 204 COLOUR_TEXT_REGION 189 622 204 622 50 HELIX 238 622 252 COLOUR_TEXT_REGION 238 622 252 622 50 HELIX 265 622 282 COLOUR_TEXT_REGION 265 622 282 622 50 HELIX 291 622 299 COLOUR_TEXT_REGION 291 622 299 622 50