SILENT_MODE
BLOCK_FILE jp_iA3qAjL.concise.blc
MAX_NSEQ 988
MAX_INPUT_LEN 990
OUTPUT_FILE jp_iA3qAjL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 90 977   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 978 90 987 H SPACE
SUB_CHARS 1 978 90 987 E SPACE
SUB_CHARS 1 978 90 987 - SPACE
STRAND 5 981 8
COLOUR_TEXT_REGION 5 981 8 981 51
STRAND 26 981 33
COLOUR_TEXT_REGION 26 981 33 981 51
STRAND 39 981 46
COLOUR_TEXT_REGION 39 981 46 981 51
STRAND 74 981 84
COLOUR_TEXT_REGION 74 981 84 981 51
STRAND 86 981 88
COLOUR_TEXT_REGION 86 981 88 981 51
HELIX 14 981 21
COLOUR_TEXT_REGION 14 981 21 981 50
HELIX 53 981 63
COLOUR_TEXT_REGION 53 981 63 981 50
STRAND 5 986 7
COLOUR_TEXT_REGION 5 986 7 986 51
STRAND 26 986 33
COLOUR_TEXT_REGION 26 986 33 986 51
STRAND 39 986 46
COLOUR_TEXT_REGION 39 986 46 986 51
STRAND 74 986 83
COLOUR_TEXT_REGION 74 986 83 986 51
STRAND 86 986 89
COLOUR_TEXT_REGION 86 986 89 986 51
HELIX 14 986 21
COLOUR_TEXT_REGION 14 986 21 986 50
HELIX 53 986 63
COLOUR_TEXT_REGION 53 986 63 986 50
STRAND 5 987 8
COLOUR_TEXT_REGION 5 987 8 987 51
STRAND 25 987 33
COLOUR_TEXT_REGION 25 987 33 987 51
STRAND 39 987 45
COLOUR_TEXT_REGION 39 987 45 987 51
STRAND 74 987 88
COLOUR_TEXT_REGION 74 987 88 987 51
HELIX 15 987 20
COLOUR_TEXT_REGION 15 987 20 987 50
HELIX 53 987 63
COLOUR_TEXT_REGION 53 987 63 987 50