SILENT_MODE
BLOCK_FILE jp_8UG6tR4.concise.blc
MAX_NSEQ 475
MAX_INPUT_LEN 477
OUTPUT_FILE jp_8UG6tR4.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 86 464   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 465 86 474 H SPACE
SUB_CHARS 1 465 86 474 E SPACE
SUB_CHARS 1 465 86 474 - SPACE
STRAND 4 468 11
COLOUR_TEXT_REGION 4 468 11 468 51
STRAND 35 468 39
COLOUR_TEXT_REGION 35 468 39 468 51
STRAND 54 468 61
COLOUR_TEXT_REGION 54 468 61 468 51
STRAND 79 468 83
COLOUR_TEXT_REGION 79 468 83 468 51
HELIX 20 468 30
COLOUR_TEXT_REGION 20 468 30 468 50
HELIX 65 468 73
COLOUR_TEXT_REGION 65 468 73 468 50
STRAND 4 473 11
COLOUR_TEXT_REGION 4 473 11 473 51
STRAND 35 473 39
COLOUR_TEXT_REGION 35 473 39 473 51
STRAND 54 473 61
COLOUR_TEXT_REGION 54 473 61 473 51
STRAND 79 473 83
COLOUR_TEXT_REGION 79 473 83 473 51
HELIX 20 473 30
COLOUR_TEXT_REGION 20 473 30 473 50
HELIX 44 473 44
COLOUR_TEXT_REGION 44 473 44 473 50
HELIX 65 473 73
COLOUR_TEXT_REGION 65 473 73 473 50
STRAND 4 474 11
COLOUR_TEXT_REGION 4 474 11 474 51
STRAND 35 474 39
COLOUR_TEXT_REGION 35 474 39 474 51
STRAND 54 474 61
COLOUR_TEXT_REGION 54 474 61 474 51
STRAND 80 474 83
COLOUR_TEXT_REGION 80 474 83 474 51
HELIX 20 474 31
COLOUR_TEXT_REGION 20 474 31 474 50
HELIX 45 474 47
COLOUR_TEXT_REGION 45 474 47 474 50
HELIX 65 474 73
COLOUR_TEXT_REGION 65 474 73 474 50