SILENT_MODE BLOCK_FILE jp_BhrKl_L.concise.blc MAX_NSEQ 65 MAX_INPUT_LEN 67 OUTPUT_FILE jp_BhrKl_L.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 125 54 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 55 125 64 H SPACE SUB_CHARS 1 55 125 64 E SPACE SUB_CHARS 1 55 125 64 - SPACE STRAND 8 58 15 COLOUR_TEXT_REGION 8 58 15 58 51 STRAND 44 58 48 COLOUR_TEXT_REGION 44 58 48 58 51 STRAND 59 58 63 COLOUR_TEXT_REGION 59 58 63 58 51 STRAND 76 58 82 COLOUR_TEXT_REGION 76 58 82 58 51 STRAND 115 58 120 COLOUR_TEXT_REGION 115 58 120 58 51 HELIX 24 58 38 COLOUR_TEXT_REGION 24 58 38 58 50 HELIX 91 58 102 COLOUR_TEXT_REGION 91 58 102 58 50 HELIX 104 58 110 COLOUR_TEXT_REGION 104 58 110 58 50 STRAND 8 63 15 COLOUR_TEXT_REGION 8 63 15 63 51 STRAND 44 63 48 COLOUR_TEXT_REGION 44 63 48 63 51 STRAND 59 63 63 COLOUR_TEXT_REGION 59 63 63 63 51 STRAND 76 63 82 COLOUR_TEXT_REGION 76 63 82 63 51 STRAND 115 63 120 COLOUR_TEXT_REGION 115 63 120 63 51 HELIX 24 63 38 COLOUR_TEXT_REGION 24 63 38 63 50 HELIX 91 63 102 COLOUR_TEXT_REGION 91 63 102 63 50 HELIX 104 63 110 COLOUR_TEXT_REGION 104 63 110 63 50 STRAND 8 64 16 COLOUR_TEXT_REGION 8 64 16 64 51 STRAND 44 64 49 COLOUR_TEXT_REGION 44 64 49 64 51 STRAND 59 64 63 COLOUR_TEXT_REGION 59 64 63 64 51 STRAND 75 64 82 COLOUR_TEXT_REGION 75 64 82 64 51 STRAND 114 64 120 COLOUR_TEXT_REGION 114 64 120 64 51 HELIX 24 64 37 COLOUR_TEXT_REGION 24 64 37 64 50 HELIX 92 64 97 COLOUR_TEXT_REGION 92 64 97 64 50 HELIX 104 64 110 COLOUR_TEXT_REGION 104 64 110 64 50