SILENT_MODE
BLOCK_FILE jp_amAiS6a.concise.blc
MAX_NSEQ 875
MAX_INPUT_LEN 877
OUTPUT_FILE jp_amAiS6a.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 96 864   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 865 96 874 H SPACE
SUB_CHARS 1 865 96 874 E SPACE
SUB_CHARS 1 865 96 874 - SPACE
STRAND 5 868 8
COLOUR_TEXT_REGION 5 868 8 868 51
STRAND 13 868 17
COLOUR_TEXT_REGION 13 868 17 868 51
STRAND 21 868 28
COLOUR_TEXT_REGION 21 868 28 868 51
STRAND 34 868 39
COLOUR_TEXT_REGION 34 868 39 868 51
STRAND 43 868 43
COLOUR_TEXT_REGION 43 868 43 868 51
STRAND 50 868 55
COLOUR_TEXT_REGION 50 868 55 868 51
STRAND 59 868 66
COLOUR_TEXT_REGION 59 868 66 868 51
STRAND 73 868 81
COLOUR_TEXT_REGION 73 868 81 868 51
STRAND 84 868 95
COLOUR_TEXT_REGION 84 868 95 868 51
STRAND 5 873 8
COLOUR_TEXT_REGION 5 873 8 873 51
STRAND 13 873 17
COLOUR_TEXT_REGION 13 873 17 873 51
STRAND 21 873 28
COLOUR_TEXT_REGION 21 873 28 873 51
STRAND 34 873 39
COLOUR_TEXT_REGION 34 873 39 873 51
STRAND 50 873 55
COLOUR_TEXT_REGION 50 873 55 873 51
STRAND 59 873 65
COLOUR_TEXT_REGION 59 873 65 873 51
STRAND 72 873 81
COLOUR_TEXT_REGION 72 873 81 873 51
STRAND 85 873 94
COLOUR_TEXT_REGION 85 873 94 873 51
STRAND 5 874 8
COLOUR_TEXT_REGION 5 874 8 874 51
STRAND 13 874 17
COLOUR_TEXT_REGION 13 874 17 874 51
STRAND 21 874 28
COLOUR_TEXT_REGION 21 874 28 874 51
STRAND 34 874 39
COLOUR_TEXT_REGION 34 874 39 874 51
STRAND 43 874 43
COLOUR_TEXT_REGION 43 874 43 874 51
STRAND 50 874 55
COLOUR_TEXT_REGION 50 874 55 874 51
STRAND 59 874 66
COLOUR_TEXT_REGION 59 874 66 874 51
STRAND 73 874 95
COLOUR_TEXT_REGION 73 874 95 874 51