SILENT_MODE
BLOCK_FILE jp_PwcFOWI.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_PwcFOWI.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 282 28   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 29 282 38 H SPACE
SUB_CHARS 1 29 282 38 E SPACE
SUB_CHARS 1 29 282 38 - SPACE
STRAND 2 32 7
COLOUR_TEXT_REGION 2 32 7 32 51
STRAND 33 32 38
COLOUR_TEXT_REGION 33 32 38 32 51
STRAND 66 32 71
COLOUR_TEXT_REGION 66 32 71 32 51
STRAND 93 32 96
COLOUR_TEXT_REGION 93 32 96 32 51
STRAND 115 32 118
COLOUR_TEXT_REGION 115 32 118 32 51
STRAND 179 32 182
COLOUR_TEXT_REGION 179 32 182 32 51
STRAND 221 32 222
COLOUR_TEXT_REGION 221 32 222 32 51
STRAND 260 32 263
COLOUR_TEXT_REGION 260 32 263 32 51
STRAND 271 32 274
COLOUR_TEXT_REGION 271 32 274 32 51
HELIX 8 32 10
COLOUR_TEXT_REGION 8 32 10 32 50
HELIX 13 32 27
COLOUR_TEXT_REGION 13 32 27 32 50
HELIX 47 32 60
COLOUR_TEXT_REGION 47 32 60 32 50
HELIX 79 32 88
COLOUR_TEXT_REGION 79 32 88 32 50
HELIX 102 32 110
COLOUR_TEXT_REGION 102 32 110 32 50
HELIX 133 32 138
COLOUR_TEXT_REGION 133 32 138 32 50
HELIX 140 32 169
COLOUR_TEXT_REGION 140 32 169 32 50
HELIX 185 32 190
COLOUR_TEXT_REGION 185 32 190 32 50
HELIX 197 32 212
COLOUR_TEXT_REGION 197 32 212 32 50
HELIX 228 32 246
COLOUR_TEXT_REGION 228 32 246 32 50
HELIX 248 32 255
COLOUR_TEXT_REGION 248 32 255 32 50
STRAND 2 37 6
COLOUR_TEXT_REGION 2 37 6 37 51
STRAND 33 37 38
COLOUR_TEXT_REGION 33 37 38 37 51
STRAND 66 37 70
COLOUR_TEXT_REGION 66 37 70 37 51
STRAND 93 37 96
COLOUR_TEXT_REGION 93 37 96 37 51
STRAND 115 37 118
COLOUR_TEXT_REGION 115 37 118 37 51
STRAND 179 37 182
COLOUR_TEXT_REGION 179 37 182 37 51
STRAND 221 37 223
COLOUR_TEXT_REGION 221 37 223 37 51
STRAND 227 37 229
COLOUR_TEXT_REGION 227 37 229 37 51
STRAND 260 37 263
COLOUR_TEXT_REGION 260 37 263 37 51
STRAND 271 37 276
COLOUR_TEXT_REGION 271 37 276 37 51
HELIX 7 37 10
COLOUR_TEXT_REGION 7 37 10 37 50
HELIX 13 37 27
COLOUR_TEXT_REGION 13 37 27 37 50
HELIX 48 37 60
COLOUR_TEXT_REGION 48 37 60 37 50
HELIX 79 37 88
COLOUR_TEXT_REGION 79 37 88 37 50
HELIX 102 37 110
COLOUR_TEXT_REGION 102 37 110 37 50
HELIX 133 37 169
COLOUR_TEXT_REGION 133 37 169 37 50
HELIX 184 37 190
COLOUR_TEXT_REGION 184 37 190 37 50
HELIX 197 37 212
COLOUR_TEXT_REGION 197 37 212 37 50
HELIX 230 37 255
COLOUR_TEXT_REGION 230 37 255 37 50
STRAND 2 38 9
COLOUR_TEXT_REGION 2 38 9 38 51
STRAND 33 38 38
COLOUR_TEXT_REGION 33 38 38 38 51
STRAND 66 38 71
COLOUR_TEXT_REGION 66 38 71 38 51
STRAND 93 38 97
COLOUR_TEXT_REGION 93 38 97 38 51
STRAND 115 38 119
COLOUR_TEXT_REGION 115 38 119 38 51
STRAND 179 38 182
COLOUR_TEXT_REGION 179 38 182 38 51
STRAND 218 38 222
COLOUR_TEXT_REGION 218 38 222 38 51
STRAND 260 38 262
COLOUR_TEXT_REGION 260 38 262 38 51
STRAND 270 38 274
COLOUR_TEXT_REGION 270 38 274 38 51
HELIX 14 38 27
COLOUR_TEXT_REGION 14 38 27 38 50
HELIX 45 38 60
COLOUR_TEXT_REGION 45 38 60 38 50
HELIX 80 38 88
COLOUR_TEXT_REGION 80 38 88 38 50
HELIX 102 38 110
COLOUR_TEXT_REGION 102 38 110 38 50
HELIX 133 38 137
COLOUR_TEXT_REGION 133 38 137 38 50
HELIX 141 38 168
COLOUR_TEXT_REGION 141 38 168 38 50
HELIX 186 38 190
COLOUR_TEXT_REGION 186 38 190 38 50
HELIX 196 38 212
COLOUR_TEXT_REGION 196 38 212 38 50
HELIX 228 38 246
COLOUR_TEXT_REGION 228 38 246 38 50
HELIX 248 38 255
COLOUR_TEXT_REGION 248 38 255 38 50