Filename Description -------- ----------- jp_w5HBGfJ.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_w5HBGfJ.als Alscript command file. Used to generate PS/PDF outputjp_w5HBGfJ.blast.gz PSIBLAST output (compressed) jp_w5HBGfJ.coils.csv The output from coils in CSV format jp_w5HBGfJ.coilseq.lupas_14 The output from coils using a window length of 14 jp_w5HBGfJ.coilseq.lupas_21 The output from coils using a window length of 21 jp_w5HBGfJ.coilseq.lupas_28 The output from coils using a window length of 28 jp_w5HBGfJ.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_w5HBGfJ.concise.blc A BLC file of the prediction and alignment jp_w5HBGfJ.concise.pdf A PDF file of the prediction and alignment jp_w5HBGfJ.fasta Input query sequence in FASTA format jp_w5HBGfJ.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_w5HBGfJ.hmm The HHMer2 profile of the alignment jp_w5HBGfJ.html A HTML file of the prediction and alignment jp_w5HBGfJ.input Your raw input jp_w5HBGfJ.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_w5HBGfJ.jnet The output from Jnet jp_w5HBGfJ.profile PSIBLAST profile jp_w5HBGfJ.pssm PSIBLAST PSSM in a format for Jnet jp_w5HBGfJ.seq Your sequence jp_w5HBGfJ.simple.html The brief HTML output of the query sequence and prediction only jp_w5HBGfJ.svg.html A Jalview generated SVG file with summary of the results.