SILENT_MODE BLOCK_FILE jp_mJR642D.concise.blc MAX_NSEQ 887 MAX_INPUT_LEN 889 OUTPUT_FILE jp_mJR642D.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 190 876 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 877 190 886 H SPACE SUB_CHARS 1 877 190 886 E SPACE SUB_CHARS 1 877 190 886 - SPACE STRAND 4 880 9 COLOUR_TEXT_REGION 4 880 9 880 51 STRAND 15 880 15 COLOUR_TEXT_REGION 15 880 15 880 51 STRAND 31 880 37 COLOUR_TEXT_REGION 31 880 37 880 51 STRAND 147 880 153 COLOUR_TEXT_REGION 147 880 153 880 51 STRAND 160 880 169 COLOUR_TEXT_REGION 160 880 169 880 51 STRAND 188 880 188 COLOUR_TEXT_REGION 188 880 188 880 51 HELIX 62 880 71 COLOUR_TEXT_REGION 62 880 71 880 50 HELIX 79 880 87 COLOUR_TEXT_REGION 79 880 87 880 50 HELIX 98 880 111 COLOUR_TEXT_REGION 98 880 111 880 50 HELIX 114 880 120 COLOUR_TEXT_REGION 114 880 120 880 50 HELIX 132 880 141 COLOUR_TEXT_REGION 132 880 141 880 50 STRAND 3 885 9 COLOUR_TEXT_REGION 3 885 9 885 51 STRAND 32 885 36 COLOUR_TEXT_REGION 32 885 36 885 51 STRAND 147 885 153 COLOUR_TEXT_REGION 147 885 153 885 51 STRAND 160 885 169 COLOUR_TEXT_REGION 160 885 169 885 51 HELIX 62 885 68 COLOUR_TEXT_REGION 62 885 68 885 50 HELIX 79 885 87 COLOUR_TEXT_REGION 79 885 87 885 50 HELIX 98 885 110 COLOUR_TEXT_REGION 98 885 110 885 50 HELIX 115 885 120 COLOUR_TEXT_REGION 115 885 120 885 50 HELIX 132 885 141 COLOUR_TEXT_REGION 132 885 141 885 50 STRAND 4 886 9 COLOUR_TEXT_REGION 4 886 9 886 51 STRAND 14 886 16 COLOUR_TEXT_REGION 14 886 16 886 51 STRAND 31 886 37 COLOUR_TEXT_REGION 31 886 37 886 51 STRAND 147 886 153 COLOUR_TEXT_REGION 147 886 153 886 51 STRAND 160 886 169 COLOUR_TEXT_REGION 160 886 169 886 51 STRAND 188 886 189 COLOUR_TEXT_REGION 188 886 189 886 51 HELIX 63 886 72 COLOUR_TEXT_REGION 63 886 72 886 50 HELIX 81 886 83 COLOUR_TEXT_REGION 81 886 83 886 50 HELIX 100 886 120 COLOUR_TEXT_REGION 100 886 120 886 50 HELIX 132 886 142 COLOUR_TEXT_REGION 132 886 142 886 50