SILENT_MODE
BLOCK_FILE jp_oqvWWwj.concise.blc
MAX_NSEQ 535
MAX_INPUT_LEN 537
OUTPUT_FILE jp_oqvWWwj.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 64 524   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 525 64 534 H SPACE
SUB_CHARS 1 525 64 534 E SPACE
SUB_CHARS 1 525 64 534 - SPACE
STRAND 4 528 8
COLOUR_TEXT_REGION 4 528 8 528 51
STRAND 16 528 16
COLOUR_TEXT_REGION 16 528 16 528 51
STRAND 22 528 26
COLOUR_TEXT_REGION 22 528 26 528 51
HELIX 37 528 46
COLOUR_TEXT_REGION 37 528 46 528 50
HELIX 57 528 57
COLOUR_TEXT_REGION 57 528 57 528 50
STRAND 3 533 8
COLOUR_TEXT_REGION 3 533 8 533 51
STRAND 16 533 17
COLOUR_TEXT_REGION 16 533 17 533 51
STRAND 22 533 26
COLOUR_TEXT_REGION 22 533 26 533 51
HELIX 37 533 42
COLOUR_TEXT_REGION 37 533 42 533 50
HELIX 44 533 45
COLOUR_TEXT_REGION 44 533 45 533 50
STRAND 5 534 8
COLOUR_TEXT_REGION 5 534 8 534 51
STRAND 23 534 27
COLOUR_TEXT_REGION 23 534 27 534 51
HELIX 36 534 46
COLOUR_TEXT_REGION 36 534 46 534 50
HELIX 57 534 61
COLOUR_TEXT_REGION 57 534 61 534 50