SILENT_MODE
BLOCK_FILE jp_F4NMQPY.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_F4NMQPY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 48 38   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 39 48 48 H SPACE
SUB_CHARS 1 39 48 48 E SPACE
SUB_CHARS 1 39 48 48 - SPACE
STRAND 35 42 36
COLOUR_TEXT_REGION 35 42 36 42 51
STRAND 40 42 45
COLOUR_TEXT_REGION 40 42 45 42 51
HELIX 7 42 22
COLOUR_TEXT_REGION 7 42 22 42 50
HELIX 29 42 34
COLOUR_TEXT_REGION 29 42 34 42 50
STRAND 34 47 36
COLOUR_TEXT_REGION 34 47 36 47 51
STRAND 40 47 44
COLOUR_TEXT_REGION 40 47 44 47 51
HELIX 7 47 22
COLOUR_TEXT_REGION 7 47 22 47 50
HELIX 30 47 30
COLOUR_TEXT_REGION 30 47 30 47 50
HELIX 32 47 33
COLOUR_TEXT_REGION 32 47 33 47 50
STRAND 36 48 36
COLOUR_TEXT_REGION 36 48 36 48 51
STRAND 40 48 45
COLOUR_TEXT_REGION 40 48 45 48 51
HELIX 7 48 21
COLOUR_TEXT_REGION 7 48 21 48 50
HELIX 29 48 35
COLOUR_TEXT_REGION 29 48 35 48 50