QUERY                  : HMPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : QUERY 
UniRef90_P48988        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_P48988
UniRef90_P07199        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_P07199
UniRef90_I3N785        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_I3N785
UniRef90_Q923C5        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_Q923C5
UniRef90_UPI0000D9C7BA : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0000D9C7BA
UniRef90_UPI0002C5563C : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0002C5563C
UniRef90_UPI00034F4C80 : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI00034F4C80
UniRef90_UPI0003841634 : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0003841634
UniRef90_UPI0003AF47D3 : --PVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0003AF47D3
UniRef90_UPI0001CE09CB : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0001CE09CB
UniRef90_UPI00044406D7 : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLIHVTRKN : UniRef90_UPI00044406D7
UniRef90_G3UNH8        : -MPVPTFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTKKN : UniRef90_G3UNH8
UniRef90_UPI0003F1731E : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTKKN : UniRef90_UPI0003F1731E
UniRef90_G7N2V2        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_G7N2V2
UniRef90_UPI000350D0DB : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI000350D0DB
UniRef90_H0W8P9        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_H0W8P9
UniRef90_UPI000333A5AD : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTKKN : UniRef90_UPI000333A5AD
UniRef90_F6WYF8        : --PVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_F6WYF8
UniRef90_UPI0003C17123 : --PVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0003C17123
UniRef90_F7FE48        : -VPVPSLGEAMAYFAMVKRYLTSFPIDERVQSHILHLEHDLVHVTRKN : UniRef90_F7FE48
UniRef90_F6WAY4        : --PVPSFGEAMAYFAMVKRYLTSFPIDERVQSHILHLEHDLVHVTRRS : UniRef90_F6WAY4
UniRef90_F6PI44        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_F6PI44
UniRef90_L5M836        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_L5M836
UniRef90_M1EJF7        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_M1EJF7
UniRef90_UPI0000E25574 : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI0000E25574
UniRef90_G3WMU9        : --PVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_G3WMU9
UniRef90_UPI0003291E77 : -VPVPSFGEAMAYFAMVKRYLTSFPIDGRVQSHILHLEHDLVHVTRKS : UniRef90_UPI0003291E77
UniRef90_P49451        : --PVPSFGEAMAYFAMVKRYLTSSPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_P49451
UniRef90_G5B4U7        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_G5B4U7
UniRef90_G1Q0X0        : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_G1Q0X0
UniRef90_S9WSM7        : ------FGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_S9WSM7
UniRef90_UPI00017C340D : -VPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_UPI00017C340D
UniRef90_Q71VN3        : ---VPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : UniRef90_Q71VN3
UniRef90_G1SAA6        : -VPVPSFGEAMAYFAMVKR----------------------------- : UniRef90_G1SAA6

                       : 1---------11--------21--------31--------41------ :
OrigSeq                : HMPVPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKN : OrigSeq

Jnet                   : ------HHHHHHHHHHHHHHHH------HHHHHHEE---EEEEEE--- : Jnet
jhmm                   : ------HHHHHHHHHHHHHHHH-------H-HHEEE---EEEEE---- : jhmm
jpssm                  : ------HHHHHHHHHHHHHHH-------HHHHHHHE---EEEEEE--- : jpssm

Lupas 14               : ------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------ : Lupas 28

Jnet_25                : ------BB-BBBBBBBB--BB--B-B---B--BBB-B---BB-BB--- : Jnet_25
Jnet_5                 : -----------B-B-BB---B--------B---B--B---B------- : Jnet_5
Jnet_0                 : ------------------------------------------------ : Jnet_0
Jnet Rel               : 999875228999999999975178875026365111264056671699 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.