SILENT_MODE
BLOCK_FILE jp_mb0pRHm.concise.blc
MAX_NSEQ 392
MAX_INPUT_LEN 394
OUTPUT_FILE jp_mb0pRHm.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 381   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 382 121 391 H SPACE
SUB_CHARS 1 382 121 391 E SPACE
SUB_CHARS 1 382 121 391 - SPACE
STRAND 3 385 11
COLOUR_TEXT_REGION 3 385 11 385 51
STRAND 42 385 48
COLOUR_TEXT_REGION 42 385 48 385 51
STRAND 87 385 95
COLOUR_TEXT_REGION 87 385 95 385 51
STRAND 105 385 107
COLOUR_TEXT_REGION 105 385 107 385 51
HELIX 16 385 33
COLOUR_TEXT_REGION 16 385 33 385 50
HELIX 39 385 41
COLOUR_TEXT_REGION 39 385 41 385 50
HELIX 58 385 64
COLOUR_TEXT_REGION 58 385 64 385 50
HELIX 111 385 114
COLOUR_TEXT_REGION 111 385 114 385 50
HELIX 116 385 116
COLOUR_TEXT_REGION 116 385 116 385 50
STRAND 0 390 5
COLOUR_TEXT_REGION 0 390 5 390 51
STRAND 7 390 11
COLOUR_TEXT_REGION 7 390 11 390 51
STRAND 42 390 48
COLOUR_TEXT_REGION 42 390 48 390 51
STRAND 88 390 95
COLOUR_TEXT_REGION 88 390 95 390 51
STRAND 105 390 107
COLOUR_TEXT_REGION 105 390 107 390 51
HELIX 16 390 33
COLOUR_TEXT_REGION 16 390 33 390 50
HELIX 39 390 41
COLOUR_TEXT_REGION 39 390 41 390 50
HELIX 58 390 64
COLOUR_TEXT_REGION 58 390 64 390 50
HELIX 111 390 114
COLOUR_TEXT_REGION 111 390 114 390 50
HELIX 116 390 116
COLOUR_TEXT_REGION 116 390 116 390 50
HELIX 118 390 118
COLOUR_TEXT_REGION 118 390 118 390 50
STRAND 4 391 10
COLOUR_TEXT_REGION 4 391 10 391 51
STRAND 42 391 49
COLOUR_TEXT_REGION 42 391 49 391 51
STRAND 73 391 73
COLOUR_TEXT_REGION 73 391 73 391 51
STRAND 86 391 95
COLOUR_TEXT_REGION 86 391 95 391 51
STRAND 106 391 107
COLOUR_TEXT_REGION 106 391 107 391 51
HELIX 16 391 33
COLOUR_TEXT_REGION 16 391 33 391 50
HELIX 41 391 41
COLOUR_TEXT_REGION 41 391 41 391 50
HELIX 58 391 64
COLOUR_TEXT_REGION 58 391 64 391 50
HELIX 110 391 117
COLOUR_TEXT_REGION 110 391 117 391 50