SILENT_MODE BLOCK_FILE jp_hQaAkgw.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_hQaAkgw.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 83 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 83 15 H SPACE SUB_CHARS 1 6 83 15 E SPACE SUB_CHARS 1 6 83 15 - SPACE STRAND 40 9 44 COLOUR_TEXT_REGION 40 9 44 9 51 STRAND 54 9 58 COLOUR_TEXT_REGION 54 9 58 9 51 STRAND 67 9 72 COLOUR_TEXT_REGION 67 9 72 9 51 STRAND 79 9 81 COLOUR_TEXT_REGION 79 9 81 9 51 HELIX 3 9 9 COLOUR_TEXT_REGION 3 9 9 9 50 HELIX 14 9 22 COLOUR_TEXT_REGION 14 9 22 9 50 HELIX 26 9 32 COLOUR_TEXT_REGION 26 9 32 9 50 STRAND 14 14 16 COLOUR_TEXT_REGION 14 14 16 14 51 STRAND 40 14 43 COLOUR_TEXT_REGION 40 14 43 14 51 STRAND 54 14 57 COLOUR_TEXT_REGION 54 14 57 14 51 STRAND 68 14 72 COLOUR_TEXT_REGION 68 14 72 14 51 STRAND 80 14 82 COLOUR_TEXT_REGION 80 14 82 14 51 HELIX 3 14 8 COLOUR_TEXT_REGION 3 14 8 14 50 HELIX 17 14 23 COLOUR_TEXT_REGION 17 14 23 14 50 HELIX 27 14 32 COLOUR_TEXT_REGION 27 14 32 14 50 STRAND 40 15 45 COLOUR_TEXT_REGION 40 15 45 15 51 STRAND 53 15 58 COLOUR_TEXT_REGION 53 15 58 15 51 STRAND 67 15 73 COLOUR_TEXT_REGION 67 15 73 15 51 STRAND 79 15 81 COLOUR_TEXT_REGION 79 15 81 15 51 HELIX 4 15 9 COLOUR_TEXT_REGION 4 15 9 15 50 HELIX 14 15 22 COLOUR_TEXT_REGION 14 15 22 15 50 HELIX 25 15 32 COLOUR_TEXT_REGION 25 15 32 15 50