SILENT_MODE
BLOCK_FILE jp_nM5itRd.concise.blc
MAX_NSEQ 691
MAX_INPUT_LEN 693
OUTPUT_FILE jp_nM5itRd.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 117 680   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 681 117 690 H SPACE
SUB_CHARS 1 681 117 690 E SPACE
SUB_CHARS 1 681 117 690 - SPACE
STRAND 8 684 16
COLOUR_TEXT_REGION 8 684 16 684 51
STRAND 25 684 30
COLOUR_TEXT_REGION 25 684 30 684 51
STRAND 35 684 40
COLOUR_TEXT_REGION 35 684 40 684 51
STRAND 57 684 61
COLOUR_TEXT_REGION 57 684 61 684 51
STRAND 73 684 79
COLOUR_TEXT_REGION 73 684 79 684 51
STRAND 86 684 91
COLOUR_TEXT_REGION 86 684 91 684 51
HELIX 94 684 112
COLOUR_TEXT_REGION 94 684 112 684 50
STRAND 8 689 16
COLOUR_TEXT_REGION 8 689 16 689 51
STRAND 25 689 30
COLOUR_TEXT_REGION 25 689 30 689 51
STRAND 35 689 40
COLOUR_TEXT_REGION 35 689 40 689 51
STRAND 57 689 60
COLOUR_TEXT_REGION 57 689 60 689 51
STRAND 74 689 80
COLOUR_TEXT_REGION 74 689 80 689 51
STRAND 86 689 91
COLOUR_TEXT_REGION 86 689 91 689 51
HELIX 94 689 111
COLOUR_TEXT_REGION 94 689 111 689 50
STRAND 8 690 9
COLOUR_TEXT_REGION 8 690 9 690 51
STRAND 11 690 14
COLOUR_TEXT_REGION 11 690 14 690 51
STRAND 25 690 30
COLOUR_TEXT_REGION 25 690 30 690 51
STRAND 35 690 40
COLOUR_TEXT_REGION 35 690 40 690 51
STRAND 57 690 63
COLOUR_TEXT_REGION 57 690 63 690 51
STRAND 73 690 78
COLOUR_TEXT_REGION 73 690 78 690 51
STRAND 86 690 91
COLOUR_TEXT_REGION 86 690 91 690 51
HELIX 7 690 7
COLOUR_TEXT_REGION 7 690 7 690 50
HELIX 10 690 10
COLOUR_TEXT_REGION 10 690 10 690 50
HELIX 95 690 112
COLOUR_TEXT_REGION 95 690 112 690 50