QUERY           : DTCGSGYNVDQRRTNSGCKAGNGDRHFCGCDRTGVVECKGGKWTEVQDCGSSSCKGTSNGGATC : QUERY 
UniRef90_B0YDU9 : DTCGSGYGGDQRRTNRLVWYVNPSQSFAHGYSFKKVECRNGRWTEIQDCHASTCHGTNDGAARC : UniRef90_B0YDU9
UniRef90_M7T5H2 : DTCGAGYGGDQRRTNSPCESSNGDRHFCGCDRTGVVQCIGGTWSEIQDCHSGTCHGGNDGGAVC : UniRef90_M7T5H2

                : 1---------11--------21--------31--------41--------51--------61-- :
OrigSeq         : DTCGSGYNVDQRRTNSGCKAGNGDRHFCGCDRTGVVECKGGKWTEVQDCGSSSCKGTSNGGATC : OrigSeq

Jnet            : ---------------------------------EEEEE----EEEEE----------------- : Jnet
jhmm            : -----------------EE-------------EEEEE-----EEEEE----------------- : jhmm
jpssm           : --------------------------EE-----EEEEE----EEEEEE------E--------- : jpssm

Lupas 14        : ---------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------- : Lupas 28

Jnet_25         : --BB-BB------B---B--------BBBB--B--B-B----B--B--B----B-B---B-B-B : Jnet_25
Jnet_5          : --------------------------BB-------B-B-------B-------B---------- : Jnet_5
Jnet_0          : ---------------------------------------------------------------- : Jnet_0
Jnet Rel        : 8988777777777656611567776333477726898148704677425677413356777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.