SILENT_MODE
BLOCK_FILE jp_05RkFMD.concise.blc
MAX_NSEQ 884
MAX_INPUT_LEN 886
OUTPUT_FILE jp_05RkFMD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 77 873   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 874 77 883 H SPACE
SUB_CHARS 1 874 77 883 E SPACE
SUB_CHARS 1 874 77 883 - SPACE
STRAND 8 877 15
COLOUR_TEXT_REGION 8 877 15 877 51
STRAND 40 877 44
COLOUR_TEXT_REGION 40 877 44 877 51
STRAND 47 877 54
COLOUR_TEXT_REGION 47 877 54 877 51
HELIX 18 877 35
COLOUR_TEXT_REGION 18 877 35 877 50
HELIX 61 877 75
COLOUR_TEXT_REGION 61 877 75 877 50
STRAND 8 882 14
COLOUR_TEXT_REGION 8 882 14 882 51
STRAND 40 882 44
COLOUR_TEXT_REGION 40 882 44 882 51
STRAND 47 882 54
COLOUR_TEXT_REGION 47 882 54 882 51
HELIX 18 882 35
COLOUR_TEXT_REGION 18 882 35 882 50
HELIX 60 882 75
COLOUR_TEXT_REGION 60 882 75 882 50
STRAND 8 883 15
COLOUR_TEXT_REGION 8 883 15 883 51
STRAND 40 883 44
COLOUR_TEXT_REGION 40 883 44 883 51
STRAND 47 883 54
COLOUR_TEXT_REGION 47 883 54 883 51
HELIX 19 883 34
COLOUR_TEXT_REGION 19 883 34 883 50
HELIX 62 883 75
COLOUR_TEXT_REGION 62 883 75 883 50