SILENT_MODE BLOCK_FILE jp_FuHUTaT.concise.blc MAX_NSEQ 448 MAX_INPUT_LEN 450 OUTPUT_FILE jp_FuHUTaT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 132 437 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 438 132 447 H SPACE SUB_CHARS 1 438 132 447 E SPACE SUB_CHARS 1 438 132 447 - SPACE STRAND 25 441 41 COLOUR_TEXT_REGION 25 441 41 441 51 STRAND 46 441 62 COLOUR_TEXT_REGION 46 441 62 441 51 STRAND 67 441 74 COLOUR_TEXT_REGION 67 441 74 441 51 STRAND 86 441 93 COLOUR_TEXT_REGION 86 441 93 441 51 HELIX 7 441 16 COLOUR_TEXT_REGION 7 441 16 441 50 HELIX 98 441 128 COLOUR_TEXT_REGION 98 441 128 441 50 STRAND 25 446 30 COLOUR_TEXT_REGION 25 446 30 446 51 STRAND 35 446 41 COLOUR_TEXT_REGION 35 446 41 446 51 STRAND 46 446 62 COLOUR_TEXT_REGION 46 446 62 446 51 STRAND 67 446 74 COLOUR_TEXT_REGION 67 446 74 446 51 STRAND 86 446 93 COLOUR_TEXT_REGION 86 446 93 446 51 HELIX 7 446 16 COLOUR_TEXT_REGION 7 446 16 446 50 HELIX 98 446 109 COLOUR_TEXT_REGION 98 446 109 446 50 HELIX 111 446 128 COLOUR_TEXT_REGION 111 446 128 446 50 STRAND 20 447 22 COLOUR_TEXT_REGION 20 447 22 447 51 STRAND 25 447 42 COLOUR_TEXT_REGION 25 447 42 447 51 STRAND 46 447 62 COLOUR_TEXT_REGION 46 447 62 447 51 STRAND 67 447 75 COLOUR_TEXT_REGION 67 447 75 447 51 STRAND 86 447 93 COLOUR_TEXT_REGION 86 447 93 447 51 HELIX 6 447 16 COLOUR_TEXT_REGION 6 447 16 447 50 HELIX 99 447 129 COLOUR_TEXT_REGION 99 447 129 447 50