SILENT_MODE
BLOCK_FILE jp_o6JJukg.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_o6JJukg.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 153 32   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 33 153 42 H SPACE
SUB_CHARS 1 33 153 42 E SPACE
SUB_CHARS 1 33 153 42 - SPACE
STRAND 4 36 9
COLOUR_TEXT_REGION 4 36 9 36 51
STRAND 27 36 32
COLOUR_TEXT_REGION 27 36 32 36 51
STRAND 35 36 41
COLOUR_TEXT_REGION 35 36 41 36 51
STRAND 48 36 53
COLOUR_TEXT_REGION 48 36 53 36 51
STRAND 58 36 62
COLOUR_TEXT_REGION 58 36 62 36 51
STRAND 67 36 72
COLOUR_TEXT_REGION 67 36 72 36 51
STRAND 77 36 81
COLOUR_TEXT_REGION 77 36 81 36 51
STRAND 88 36 93
COLOUR_TEXT_REGION 88 36 93 36 51
STRAND 97 36 102
COLOUR_TEXT_REGION 97 36 102 36 51
STRAND 107 36 108
COLOUR_TEXT_REGION 107 36 108 36 51
STRAND 110 36 121
COLOUR_TEXT_REGION 110 36 121 36 51
HELIX 15 36 22
COLOUR_TEXT_REGION 15 36 22 36 50
HELIX 147 36 151
COLOUR_TEXT_REGION 147 36 151 36 50
STRAND 3 41 9
COLOUR_TEXT_REGION 3 41 9 41 51
STRAND 27 41 32
COLOUR_TEXT_REGION 27 41 32 41 51
STRAND 34 41 41
COLOUR_TEXT_REGION 34 41 41 41 51
STRAND 48 41 53
COLOUR_TEXT_REGION 48 41 53 41 51
STRAND 58 41 62
COLOUR_TEXT_REGION 58 41 62 41 51
STRAND 67 41 72
COLOUR_TEXT_REGION 67 41 72 41 51
STRAND 77 41 81
COLOUR_TEXT_REGION 77 41 81 41 51
STRAND 88 41 93
COLOUR_TEXT_REGION 88 41 93 41 51
STRAND 97 41 102
COLOUR_TEXT_REGION 97 41 102 41 51
STRAND 107 41 108
COLOUR_TEXT_REGION 107 41 108 41 51
STRAND 110 41 120
COLOUR_TEXT_REGION 110 41 120 41 51
STRAND 141 41 143
COLOUR_TEXT_REGION 141 41 143 41 51
HELIX 15 41 22
COLOUR_TEXT_REGION 15 41 22 41 50
HELIX 147 41 151
COLOUR_TEXT_REGION 147 41 151 41 50
STRAND 4 42 9
COLOUR_TEXT_REGION 4 42 9 42 51
STRAND 27 42 32
COLOUR_TEXT_REGION 27 42 32 42 51
STRAND 35 42 41
COLOUR_TEXT_REGION 35 42 41 42 51
STRAND 48 42 53
COLOUR_TEXT_REGION 48 42 53 42 51
STRAND 58 42 63
COLOUR_TEXT_REGION 58 42 63 42 51
STRAND 67 42 72
COLOUR_TEXT_REGION 67 42 72 42 51
STRAND 77 42 81
COLOUR_TEXT_REGION 77 42 81 42 51
STRAND 87 42 93
COLOUR_TEXT_REGION 87 42 93 42 51
STRAND 97 42 102
COLOUR_TEXT_REGION 97 42 102 42 51
STRAND 106 42 108
COLOUR_TEXT_REGION 106 42 108 42 51
STRAND 110 42 121
COLOUR_TEXT_REGION 110 42 121 42 51
HELIX 15 42 22
COLOUR_TEXT_REGION 15 42 22 42 50
HELIX 148 42 151
COLOUR_TEXT_REGION 148 42 151 42 50