QUERY               : FTKNIFVLDVTAKTLCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQK : QUERY 
UniRef90_C8TED6     : FTKNVFVLDQKRKTLCGQIAGRSSMPYCQVKIGRNFALKAVSTPEPKGYVLEINDAGAYRIQDGNDVISMMLSADSVEATQERWEEWKFETISCVPMATVLNINGAMIDAEIKISKGMGMVAPYTRNDFDRRELPELPGVQRSKYDVRELRQK : UniRef90_C8TED6
UniRef90_U5YJB6     : FTKVVCVLDPYGKTFCGLVAKLCNKPYCLVKIGRVVAFEGVDDPTPKSYILQIEQVGAYRIQDGQDTISLMITQTGIEATVERWEEWKFETLSAVPMASMIMVAGVRKDAEVKFVKGMGLVAPYTKNEMDRRDIPELPGVLPSSLGLKELREK : UniRef90_U5YJB6
UniRef90_U5YJB2     : FTKTVCVLDAYGKTFCGNVAKLCNKPYCLIKIGRVVSIEAVDNPRPKSYILQIEQVGSYRIQDGQDNISLIITNQGVEATVERWEEWKFENLSPIPMATMIMVADKRVDAEVKFVKGMGIIAPYTKNEMDRRDVPDLPGVMPSSMGVKELREK : UniRef90_U5YJB2
UniRef90_P27280     : FTKNVFVLDQKRKTICGQIAARQSLPYCQIKIGRNFALRAVATPEPKGYVLEICDVGAYRIQDGNDVISLMISADGVEGTQERWEEWKFESDLMRTNGHSSKYKRSVGRREIKVSKGMGIVPPYTRNDFDRRELPELPGVQRSKYDIRELRQK : UniRef90_P27280
UniRef90_W8DRK8     : FTKNVSVLDGSGTTICGVIAKSAHKPYCNISIGRNVSIKAVDNPPPKAYVLQIRQEGGYRIQDGQDTISLMITASGVEATVERWEEWQFEVLSAMPMAIMMQYNGEMVDAEIKYAKGMGVVAPYVKNEVDRRDLPKLPGLSESQYDVKTLRQK : UniRef90_W8DRK8
UniRef90_W5QLZ1     : FTRTICVLDPGAKTFCGKVAKLEGKTYFVIKIGRTTQVGVSNTPVPKCYVLDVAGPGSYRVQDGQDTVSVILSESGFEATGERWEEWRFEVLSATPIVARMAVGEDEFDAEIKYSKGLGSVPPYAKNEADRRMMPTLPGVKALDMPIRDFRQ- : UniRef90_W5QLZ1
UniRef90_H9ZXQ9     : FTKQICVLDPGCSTICGKIARESKCPYTQLKTGRIVGFQAVRSPPPKAYILEITKPGAYRIMDGQDQISIMVEEYGVEITTDRWEEWKYEVVTAMPMTALVDTPRGKVDAELKYARGTGLVPAYTRNEFDRRELPTLPGVGVSEISVRDLRAK : UniRef90_H9ZXQ9
UniRef90_H9ZXS8     : FTKTICVYDPSGRTICGKVAKEKRDPYAIIKLGRVFSLKSADGPQPKSYVLEISRPGAYRIQDGQDTISLMIEENGVEGTTERWEEWKFETLNPMPMATMIRHNGQMVDAELKYCKGMGMIEPYTKNDFDRKEMPALPG-------------- : UniRef90_H9ZXS8
UniRef90_P27279     : FTRSVCVLDLGQKTYCGKVVRAVDGVYYTIKIGRTVQCGVTPTPIPKSYVLEIRECGRYRIQDGTDVLSLMITESGIEVTQNRWEEWSFEALTPVPMAVAVNVGRGSFDTEIKYVRGSGAVPPYTKNGMDRRAMPSLPGITTLDVGVRDLRLK : UniRef90_P27279
UniRef90_W5QLW8     : FTRTVCIYDPQNRTFCGRSAAMVCNSYYTIKMGRTTQCGVSPVPVPKSYVLEIPDVGSYRILDGQDSISVIVTETGVEATSERWEEWKFEGVNCVPMVVQTEIGKGLIDMEIKFSKGMGLVKPYVKNEVSRTEIPRLPGASVIDTPIRDYRQ- : UniRef90_W5QLW8
UniRef90_U3RAB0     : FPKTVCVLDPKGETICGMIAKSQHKPYCLVRTGRVICLKAISQPPPKAYVLEVVKCGAYRLIDGQDQISIMLNKDCVEMTSERWEEWQYEMVSIKPMVVSLQLEYGVVDAELKYGKGFGSVEPYKKNELERGEVPTLPGVQQSAVGLRELRTK : UniRef90_U3RAB0
UniRef90_Q9WAT7     : YTKTVCVYDPQNATFCSRGANA-GENYYQVKIGRTTQITRTNAPNPKAYVVEIQRPCSVRLLDGNDIISLIISEEGIEVTTERWEEWLFEALTPIPMVISLHIKGQKTEAEIKYCKASGVIAPYTPNEVDRRITPQLPGITFTDVSVRDFRQ- : UniRef90_Q9WAT7
UniRef90_E1AA96     : FTRTIVLKSTGKDDYVAKMCNALGCEYLVVRHGLGMHVAGSNTPTHGCMLLLIPGAGSFRLIDRDQSTFVVVSSDGLEVQQDRWPGMRFEAVDMFPRCCRIVVGDVAADSEIRFGSASGTVPPYTAGEMEAQDEISLPGLDFSDSDLREY--- : UniRef90_E1AA96
UniRef90_U5N4A9     : FTKRVYVLDTRKSTICGRISQLAGLPYCKIESGRVVSVTACAQPSDRGYVLEIEGKGAYRIVDGQDTISLMIDDYGVSMTTGRWEEYAFEMVSVRPHVMKVKEDRVFKNIEIKHGRGCAAVPPYMRVDREQNSELRLPGTERSDMDVSTYRQK : UniRef90_U5N4A9
UniRef90_M1GUF7     : YTKTFLLYSQDEGNFVGKICRAMKAVYYAVKVGQTTHMCVTDDPVPQAFVISIGSEGAYRVIDRDESVYFMITGDGVEVATGRWPKYQFESVDVVPRFCSITVKGQEVETELKVGRGVGNVKPYTELMAIKTEVCELPGIKFLNIDVREARAK : UniRef90_M1GUF7
UniRef90_C3TUR0     : FTRTVCILDRTENTYAGKVSKMMRNPYFIIKAGRSVVTGTAPFPPPRSTVIEVGDECAVAIQDGTDVTYIQLTRETVELCVERWNEYKFETLNPTSNVGRINIGGSDVLGEIKYAKAQSLIKPYTRNASRSSDMPNLPGLTPTDIDVRTHRDE : UniRef90_C3TUR0
UniRef90_Q2YH50     : -TRTFVFYCTTSTTSVGKIAKAFGTQYLAVKVGTTTHFEGVNFPIPRCTLITVLGPCAIKVIDRDVTCSFMITETGLEASMNRWAKYKFETVETSSRFCKINIGGKMIEESIRVGKATGLVMPYTEEDMQQEEMDDLPGVEFINLDVQEQREK : UniRef90_Q2YH50
UniRef90_H2B6C2     : FTRVIVLKSDGKDDFVAKMCAVLGCEYVVVRHGLGTQIAGSDTPAHGCLLLTIPGPGSFRMIDRDQSTFLVVSGDGLEVQQDRWTGMRFEAVDMYPRACRIRYGEKENDSEIRFGRASGTVPPYTPDGVEEQEEVALPGISF----------- : UniRef90_H2B6C2
UniRef90_Q2Q1D6     : -TRTFSLYSLNNNNFIGKVTKCMNAQYLAVKVGITTHFEAVNVPPPRSTVITVSNPCAFKVQDRETTTHFMISESGLEACLGRWSKYKFESVDTTSRFCKMSIGGQTVEETIRVGKCLGIVQPYTEEEMDIGEGIELPGISFVNLEVAEFRSK : UniRef90_Q2Q1D6
UniRef90_H2B6B2     : FTRTIVLKSEGKDDFVARMCSTLECEYVVVKHGVGTHVVGSNTPIHGCLLVVIPNAGSYRLIDRDQSTFLVVSRDGIEVQQDRWPGMRFEAVDMYPRACKIRFGTKENDSEVRFGKASGNVPPYTPDNVDDQEEFTLPGVCF----------- : UniRef90_H2B6B2
UniRef90_T1ST45     : FPKTFLFWSDDESNFVGMMSKVTGKPYLAIRTGMTTQVSMMDYVVPRASLVEILSCGSYRIQDRDEATFFVISEHGIEVAPERWPKLLFETVDLQNRFCEINVGGDLVKTDVKYGRGHGTIPPYTEEDSSTDSDIHLPGISFVEGDVREERER : UniRef90_T1ST45
UniRef90_X5DC18     : FTKVLAIKS-GGSDFVAQMCKTLAREYLVVKHGMGTQIVGADSPPPKSMLLLIPHEGAFRLLDRDQSLFVMVDRDGIEVAQDRWSGMRFETIDLVTRGVELTIAGQTITTEVRYGVAVGSVPPYVPDESKKDDEPDFPGVKFIEVGMREFRER : UniRef90_X5DC18
UniRef90_U5NGK0     : --RTFILYSTTEDNFVGRICKTLHTQYLAVKLGVSTHIEGVNTPVPRSTVVTITGPCAFKVVDRETTCHFMISATGIETRIGRWAQYKFETVETRSRFCKMEIGGQSVDEMLRLGRATGSVLPYTEEEMGGDEDVDLPGVKVENEDVPNLREK : UniRef90_U5NGK0
UniRef90_U5XIV7     : YAKTVCVLDESTNGFCRRLGQALKRPYVVLRIGRTVQIAVAAIPPPRSYVLRIKKDGAYRIMDGQDMISVMIHPEGVEATTERWEEWEYENLTANAYAAMFGDDGLGLEGEIKVCVGRGEVEPYTRAGVVKNEMPMLPGLIPSS--------- : UniRef90_U5XIV7
UniRef90_A0A023PLE3 : FLRTVSIHSTGSEDYVSRICRALNGSYLIVKQGMGSQQVVSDTPATGGMVLVIPGPGSFRLLDRDQSLFIVVDVNGIEIMPDRWPGFCFETIDMSAQSATIDVGSEAVPGIVSYGRAAGTVAPYTPDGSGPTDTLSLPGIKFSDEPMRELRVR : UniRef90_A0A023PLE3
UniRef90_G8DP08     : YTRTFAFYSKERNNYVGASCAAQGKNYLVVKIGATTQMCFTDSPVSRGAIIDVRKQCSIRIQDRDQSTFFVISSCSIEWSLDRWPRMVFETVDLHTKFGHLIINDKEVETEFKCGVAHGVVAPYTEEADQAGEDIELPGVKFIKIE------- : UniRef90_G8DP08
UniRef90_X5DC10     : FTRTIALKSTGKEDYVAKMCGVLGCEYLIVRHGLGMHVAGSNTPTHGCMLLLIPGAGSFRLIDRDQSTFVVVSNDGIEVQQDRWPGMRFEAVDMFPRCCRIIVGDVASDSEIRFGNASGTV-------------------------------- : UniRef90_X5DC10
UniRef90_A2TLM8     : -----------------------------------FSCSVCTQPSDRGYVLEIEGKGAYRIVDGQDTISLMIDDYGVSMTTGRWEEYAFEMVSVRPHVMKVKEERVFKNIEIKHGRGCAAVPPYMRVDREQSSELRLPGTERSDMDVSTYRQK : UniRef90_A2TLM8

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151 :
OrigSeq             : FTKNIFVLDVTAKTLCGAIAKLSSQPYCQIKIGRVVAFKPVKNPEPKGYVLNVPGPGAYRIQDGQDIISLMLTPHGVEATTERWEEWKFEGVSVTPMATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELRQK : OrigSeq

Jnet                : ---EEEEEE-----HHHHHHHH----EEEEEE--EEEEEEE------EEEEEE----EEEEE----EEEEEE----EEEEE------EEEEEE---EEEEEE----EE-EEEEEEEEEEEE-------------------------HHHHH-- : Jnet
jhmm                : --EEEEEEE-----HHHHHHHH----EEEEEE-EEEEEEEE------EEEEEE----EEEEE----EEEEEE----EEEEE------EEEEEE---EEEEEE----EE-EEEEEEEEEEE--------------------EEE---HHHHH-- : jhmm
jpssm               : ---EEEEEE-----HHHHHHHH----EEEEEE--EEEEEEE------EEEEEE----EEEEEE---EEEEEE----EEEEE-----EEEEEEE---EEEEEE---EEE-EEEEEEEEEEEE--------------------------HHHH-- : jpssm

Lupas 14            : --------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : --------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : --------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : ---BBBBBB-----BBBBBB-B----BBBBBB-BBBBBBBB-BB---BBBBBB---BBBBBB----BBBBBBB--BBBBBB-BB--BBBBBB-BBBBBBBB-B----B-BBBBBBBBBBBB-BBB---B-----B-BBBB--B---B--B--- : Jnet_25
Jnet_5              : ----BBB-------BBB-BB------BB-B-B---BBB--B------B-BB-B---BBB-B------B-BBB---BB-B-------B------B-B-BB-B----------B-BB-B---B-------------------------B------ : Jnet_5
Jnet_0              : ----B----------BB-BB------------------------------B-------------------B--------------------------B-------------B--B-------------------------------------- : Jnet_0
Jnet Rel            : 992489984478616789888606963888726058999715788845899855885699972785589985588558986378841776772133689985474111115888888875036776766777777777772015451123227 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.