SILENT_MODE BLOCK_FILE jp_uc1myiG.concise.blc MAX_NSEQ 183 MAX_INPUT_LEN 185 OUTPUT_FILE jp_uc1myiG.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 76 172 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 173 76 182 H SPACE SUB_CHARS 1 173 76 182 E SPACE SUB_CHARS 1 173 76 182 - SPACE HELIX 4 176 19 COLOUR_TEXT_REGION 4 176 19 176 50 HELIX 24 176 33 COLOUR_TEXT_REGION 24 176 33 176 50 HELIX 53 176 74 COLOUR_TEXT_REGION 53 176 74 176 50 HELIX 4 181 18 COLOUR_TEXT_REGION 4 181 18 181 50 HELIX 24 181 33 COLOUR_TEXT_REGION 24 181 33 181 50 HELIX 53 181 54 COLOUR_TEXT_REGION 53 181 54 181 50 HELIX 57 181 74 COLOUR_TEXT_REGION 57 181 74 181 50 HELIX 4 182 19 COLOUR_TEXT_REGION 4 182 19 182 50 HELIX 24 182 33 COLOUR_TEXT_REGION 24 182 33 182 50 HELIX 52 182 74 COLOUR_TEXT_REGION 52 182 74 182 50