SILENT_MODE BLOCK_FILE jp_Yde00Ww.concise.blc MAX_NSEQ 848 MAX_INPUT_LEN 850 OUTPUT_FILE jp_Yde00Ww.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 161 837 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 838 161 847 H SPACE SUB_CHARS 1 838 161 847 E SPACE SUB_CHARS 1 838 161 847 - SPACE STRAND 5 841 11 COLOUR_TEXT_REGION 5 841 11 841 51 STRAND 43 841 50 COLOUR_TEXT_REGION 43 841 50 841 51 STRAND 71 841 76 COLOUR_TEXT_REGION 71 841 76 841 51 STRAND 125 841 126 COLOUR_TEXT_REGION 125 841 126 841 51 STRAND 130 841 134 COLOUR_TEXT_REGION 130 841 134 841 51 HELIX 25 841 36 COLOUR_TEXT_REGION 25 841 36 841 50 HELIX 54 841 65 COLOUR_TEXT_REGION 54 841 65 841 50 HELIX 87 841 95 COLOUR_TEXT_REGION 87 841 95 841 50 HELIX 102 841 110 COLOUR_TEXT_REGION 102 841 110 841 50 HELIX 123 841 124 COLOUR_TEXT_REGION 123 841 124 841 50 HELIX 139 841 159 COLOUR_TEXT_REGION 139 841 159 841 50 STRAND 4 846 11 COLOUR_TEXT_REGION 4 846 11 846 51 STRAND 19 846 21 COLOUR_TEXT_REGION 19 846 21 846 51 STRAND 43 846 49 COLOUR_TEXT_REGION 43 846 49 846 51 STRAND 72 846 76 COLOUR_TEXT_REGION 72 846 76 846 51 STRAND 124 846 126 COLOUR_TEXT_REGION 124 846 126 846 51 STRAND 130 846 134 COLOUR_TEXT_REGION 130 846 134 846 51 HELIX 25 846 36 COLOUR_TEXT_REGION 25 846 36 846 50 HELIX 54 846 66 COLOUR_TEXT_REGION 54 846 66 846 50 HELIX 87 846 95 COLOUR_TEXT_REGION 87 846 95 846 50 HELIX 103 846 110 COLOUR_TEXT_REGION 103 846 110 846 50 HELIX 140 846 159 COLOUR_TEXT_REGION 140 846 159 846 50 STRAND 5 847 11 COLOUR_TEXT_REGION 5 847 11 847 51 STRAND 43 847 50 COLOUR_TEXT_REGION 43 847 50 847 51 STRAND 71 847 76 COLOUR_TEXT_REGION 71 847 76 847 51 STRAND 131 847 135 COLOUR_TEXT_REGION 131 847 135 847 51 HELIX 25 847 35 COLOUR_TEXT_REGION 25 847 35 847 50 HELIX 54 847 64 COLOUR_TEXT_REGION 54 847 64 847 50 HELIX 86 847 95 COLOUR_TEXT_REGION 86 847 95 847 50 HELIX 101 847 110 COLOUR_TEXT_REGION 101 847 110 847 50 HELIX 118 847 118 COLOUR_TEXT_REGION 118 847 118 847 50 HELIX 121 847 126 COLOUR_TEXT_REGION 121 847 126 847 50 HELIX 139 847 159 COLOUR_TEXT_REGION 139 847 159 847 50