SILENT_MODE
BLOCK_FILE jp_MmF4922.concise.blc
MAX_NSEQ 253
MAX_INPUT_LEN 255
OUTPUT_FILE jp_MmF4922.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 76 242   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 243 76 252 H SPACE
SUB_CHARS 1 243 76 252 E SPACE
SUB_CHARS 1 243 76 252 - SPACE
STRAND 17 246 22
COLOUR_TEXT_REGION 17 246 22 246 51
STRAND 27 246 32
COLOUR_TEXT_REGION 27 246 32 246 51
STRAND 53 246 60
COLOUR_TEXT_REGION 53 246 60 246 51
STRAND 64 246 74
COLOUR_TEXT_REGION 64 246 74 246 51
HELIX 3 246 13
COLOUR_TEXT_REGION 3 246 13 246 50
HELIX 37 246 49
COLOUR_TEXT_REGION 37 246 49 246 50
STRAND 17 251 22
COLOUR_TEXT_REGION 17 251 22 251 51
STRAND 27 251 32
COLOUR_TEXT_REGION 27 251 32 251 51
STRAND 53 251 60
COLOUR_TEXT_REGION 53 251 60 251 51
STRAND 64 251 74
COLOUR_TEXT_REGION 64 251 74 251 51
HELIX 3 251 13
COLOUR_TEXT_REGION 3 251 13 251 50
HELIX 37 251 50
COLOUR_TEXT_REGION 37 251 50 251 50
STRAND 17 252 23
COLOUR_TEXT_REGION 17 252 23 252 51
STRAND 27 252 32
COLOUR_TEXT_REGION 27 252 32 252 51
STRAND 53 252 60
COLOUR_TEXT_REGION 53 252 60 252 51
STRAND 64 252 73
COLOUR_TEXT_REGION 64 252 73 252 51
HELIX 3 252 13
COLOUR_TEXT_REGION 3 252 13 252 50
HELIX 37 252 49
COLOUR_TEXT_REGION 37 252 49 252 50