SILENT_MODE BLOCK_FILE jp_Z_MC7oa.concise.blc MAX_NSEQ 375 MAX_INPUT_LEN 377 OUTPUT_FILE jp_Z_MC7oa.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 554 364 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 365 554 374 H SPACE SUB_CHARS 1 365 554 374 E SPACE SUB_CHARS 1 365 554 374 - SPACE STRAND 48 368 48 COLOUR_TEXT_REGION 48 368 48 368 51 STRAND 86 368 90 COLOUR_TEXT_REGION 86 368 90 368 51 STRAND 97 368 101 COLOUR_TEXT_REGION 97 368 101 368 51 STRAND 165 368 169 COLOUR_TEXT_REGION 165 368 169 368 51 STRAND 189 368 195 COLOUR_TEXT_REGION 189 368 195 368 51 STRAND 233 368 238 COLOUR_TEXT_REGION 233 368 238 368 51 STRAND 256 368 256 COLOUR_TEXT_REGION 256 368 256 368 51 STRAND 316 368 318 COLOUR_TEXT_REGION 316 368 318 368 51 STRAND 359 368 362 COLOUR_TEXT_REGION 359 368 362 368 51 STRAND 399 368 402 COLOUR_TEXT_REGION 399 368 402 368 51 STRAND 407 368 409 COLOUR_TEXT_REGION 407 368 409 368 51 STRAND 434 368 438 COLOUR_TEXT_REGION 434 368 438 368 51 STRAND 482 368 486 COLOUR_TEXT_REGION 482 368 486 368 51 STRAND 492 368 497 COLOUR_TEXT_REGION 492 368 497 368 51 STRAND 501 368 505 COLOUR_TEXT_REGION 501 368 505 368 51 STRAND 527 368 531 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COLOUR_TEXT_REGION 240 373 250 373 50 HELIX 265 373 268 COLOUR_TEXT_REGION 265 373 268 373 50 HELIX 278 373 286 COLOUR_TEXT_REGION 278 373 286 373 50 HELIX 289 373 312 COLOUR_TEXT_REGION 289 373 312 373 50 HELIX 321 373 335 COLOUR_TEXT_REGION 321 373 335 373 50 HELIX 343 373 352 COLOUR_TEXT_REGION 343 373 352 373 50 HELIX 367 373 381 COLOUR_TEXT_REGION 367 373 381 373 50 HELIX 386 373 396 COLOUR_TEXT_REGION 386 373 396 373 50 HELIX 413 373 428 COLOUR_TEXT_REGION 413 373 428 373 50 HELIX 462 373 477 COLOUR_TEXT_REGION 462 373 477 373 50 HELIX 482 373 483 COLOUR_TEXT_REGION 482 373 483 373 50 HELIX 496 373 497 COLOUR_TEXT_REGION 496 373 497 373 50 HELIX 509 373 520 COLOUR_TEXT_REGION 509 373 520 373 50 HELIX 536 373 545 COLOUR_TEXT_REGION 536 373 545 373 50 STRAND 85 374 90 COLOUR_TEXT_REGION 85 374 90 374 51 STRAND 97 374 101 COLOUR_TEXT_REGION 97 374 101 374 51 STRAND 141 374 142 COLOUR_TEXT_REGION 141 374 142 374 51 STRAND 165 374 169 COLOUR_TEXT_REGION 165 374 169 374 51 STRAND 189 374 194 COLOUR_TEXT_REGION 189 374 194 374 51 STRAND 210 374 212 COLOUR_TEXT_REGION 210 374 212 374 51 STRAND 232 374 238 COLOUR_TEXT_REGION 232 374 238 374 51 STRAND 255 374 257 COLOUR_TEXT_REGION 255 374 257 374 51 STRAND 317 374 318 COLOUR_TEXT_REGION 317 374 318 374 51 STRAND 359 374 361 COLOUR_TEXT_REGION 359 374 361 374 51 STRAND 397 374 402 COLOUR_TEXT_REGION 397 374 402 374 51 STRAND 433 374 437 COLOUR_TEXT_REGION 433 374 437 374 51 STRAND 482 374 486 COLOUR_TEXT_REGION 482 374 486 374 51 STRAND 492 374 498 COLOUR_TEXT_REGION 492 374 498 374 51 STRAND 501 374 505 COLOUR_TEXT_REGION 501 374 505 374 51 STRAND 527 374 531 COLOUR_TEXT_REGION 527 374 531 374 51 HELIX 21 374 32 COLOUR_TEXT_REGION 21 374 32 374 50 HELIX 38 374 39 COLOUR_TEXT_REGION 38 374 39 374 50 HELIX 44 374 56 COLOUR_TEXT_REGION 44 374 56 374 50 HELIX 59 374 71 COLOUR_TEXT_REGION 59 374 71 374 50 HELIX 75 374 80 COLOUR_TEXT_REGION 75 374 80 374 50 HELIX 112 374 120 COLOUR_TEXT_REGION 112 374 120 374 50 HELIX 147 374 157 COLOUR_TEXT_REGION 147 374 157 374 50 HELIX 179 374 184 COLOUR_TEXT_REGION 179 374 184 374 50 HELIX 196 374 205 COLOUR_TEXT_REGION 196 374 205 374 50 HELIX 216 374 227 COLOUR_TEXT_REGION 216 374 227 374 50 HELIX 241 374 250 COLOUR_TEXT_REGION 241 374 250 374 50 HELIX 278 374 286 COLOUR_TEXT_REGION 278 374 286 374 50 HELIX 289 374 312 COLOUR_TEXT_REGION 289 374 312 374 50 HELIX 323 374 331 COLOUR_TEXT_REGION 323 374 331 374 50 HELIX 339 374 352 COLOUR_TEXT_REGION 339 374 352 374 50 HELIX 367 374 382 COLOUR_TEXT_REGION 367 374 382 374 50 HELIX 385 374 394 COLOUR_TEXT_REGION 385 374 394 374 50 HELIX 407 374 410 COLOUR_TEXT_REGION 407 374 410 374 50 HELIX 415 374 427 COLOUR_TEXT_REGION 415 374 427 374 50 HELIX 467 374 477 COLOUR_TEXT_REGION 467 374 477 374 50 HELIX 509 374 519 COLOUR_TEXT_REGION 509 374 519 374 50 HELIX 536 374 545 COLOUR_TEXT_REGION 536 374 545 374 50