SILENT_MODE
BLOCK_FILE jp_rp9tu83.concise.blc
MAX_NSEQ 1039
MAX_INPUT_LEN 1041
OUTPUT_FILE jp_rp9tu83.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 142 1028   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1029 142 1038 H SPACE
SUB_CHARS 1 1029 142 1038 E SPACE
SUB_CHARS 1 1029 142 1038 - SPACE
STRAND 25 1032 30
COLOUR_TEXT_REGION 25 1032 30 1032 51
STRAND 91 1032 94
COLOUR_TEXT_REGION 91 1032 94 1032 51
STRAND 122 1032 129
COLOUR_TEXT_REGION 122 1032 129 1032 51
HELIX 3 1032 16
COLOUR_TEXT_REGION 3 1032 16 1032 50
HELIX 37 1032 47
COLOUR_TEXT_REGION 37 1032 47 1032 50
HELIX 65 1032 72
COLOUR_TEXT_REGION 65 1032 72 1032 50
HELIX 100 1032 117
COLOUR_TEXT_REGION 100 1032 117 1032 50
HELIX 137 1032 139
COLOUR_TEXT_REGION 137 1032 139 1032 50
STRAND 26 1037 31
COLOUR_TEXT_REGION 26 1037 31 1037 51
STRAND 61 1037 63
COLOUR_TEXT_REGION 61 1037 63 1037 51
STRAND 83 1037 84
COLOUR_TEXT_REGION 83 1037 84 1037 51
STRAND 91 1037 94
COLOUR_TEXT_REGION 91 1037 94 1037 51
STRAND 121 1037 129
COLOUR_TEXT_REGION 121 1037 129 1037 51
HELIX 3 1037 16
COLOUR_TEXT_REGION 3 1037 16 1037 50
HELIX 38 1037 47
COLOUR_TEXT_REGION 38 1037 47 1037 50
HELIX 65 1037 72
COLOUR_TEXT_REGION 65 1037 72 1037 50
HELIX 100 1037 117
COLOUR_TEXT_REGION 100 1037 117 1037 50
HELIX 138 1037 139
COLOUR_TEXT_REGION 138 1037 139 1037 50
STRAND 23 1038 30
COLOUR_TEXT_REGION 23 1038 30 1038 51
STRAND 91 1038 94
COLOUR_TEXT_REGION 91 1038 94 1038 51
STRAND 122 1038 129
COLOUR_TEXT_REGION 122 1038 129 1038 51
HELIX 3 1038 16
COLOUR_TEXT_REGION 3 1038 16 1038 50
HELIX 37 1038 45
COLOUR_TEXT_REGION 37 1038 45 1038 50
HELIX 65 1038 72
COLOUR_TEXT_REGION 65 1038 72 1038 50
HELIX 100 1038 117
COLOUR_TEXT_REGION 100 1038 117 1038 50
HELIX 137 1038 140
COLOUR_TEXT_REGION 137 1038 140 1038 50