SILENT_MODE
BLOCK_FILE jp_dOhcdyR.concise.blc
MAX_NSEQ 875
MAX_INPUT_LEN 877
OUTPUT_FILE jp_dOhcdyR.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 72 864   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 865 72 874 H SPACE
SUB_CHARS 1 865 72 874 E SPACE
SUB_CHARS 1 865 72 874 - SPACE
STRAND 3 868 8
COLOUR_TEXT_REGION 3 868 8 868 51
STRAND 17 868 24
COLOUR_TEXT_REGION 17 868 24 868 51
STRAND 28 868 31
COLOUR_TEXT_REGION 28 868 31 868 51
STRAND 48 868 51
COLOUR_TEXT_REGION 48 868 51 868 51
STRAND 63 868 68
COLOUR_TEXT_REGION 63 868 68 868 51
HELIX 38 868 44
COLOUR_TEXT_REGION 38 868 44 868 50
STRAND 3 873 8
COLOUR_TEXT_REGION 3 873 8 873 51
STRAND 17 873 24
COLOUR_TEXT_REGION 17 873 24 873 51
STRAND 28 873 31
COLOUR_TEXT_REGION 28 873 31 873 51
STRAND 48 873 51
COLOUR_TEXT_REGION 48 873 51 873 51
STRAND 63 873 68
COLOUR_TEXT_REGION 63 873 68 873 51
HELIX 38 873 44
COLOUR_TEXT_REGION 38 873 44 873 50
STRAND 4 874 9
COLOUR_TEXT_REGION 4 874 9 874 51
STRAND 17 874 24
COLOUR_TEXT_REGION 17 874 24 874 51
STRAND 28 874 31
COLOUR_TEXT_REGION 28 874 31 874 51
STRAND 48 874 51
COLOUR_TEXT_REGION 48 874 51 874 51
STRAND 63 874 68
COLOUR_TEXT_REGION 63 874 68 874 51
HELIX 37 874 44
COLOUR_TEXT_REGION 37 874 44 874 50