SILENT_MODE BLOCK_FILE jp_Anc4j47.concise.blc MAX_NSEQ 1104 MAX_INPUT_LEN 1106 OUTPUT_FILE jp_Anc4j47.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 176 1093 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1094 176 1103 H SPACE SUB_CHARS 1 1094 176 1103 E SPACE SUB_CHARS 1 1094 176 1103 - SPACE STRAND 22 1097 26 COLOUR_TEXT_REGION 22 1097 26 1097 51 STRAND 33 1097 34 COLOUR_TEXT_REGION 33 1097 34 1097 51 STRAND 55 1097 59 COLOUR_TEXT_REGION 55 1097 59 1097 51 STRAND 71 1097 78 COLOUR_TEXT_REGION 71 1097 78 1097 51 STRAND 93 1097 98 COLOUR_TEXT_REGION 93 1097 98 1097 51 STRAND 109 1097 118 COLOUR_TEXT_REGION 109 1097 118 1097 51 STRAND 122 1097 126 COLOUR_TEXT_REGION 122 1097 126 1097 51 STRAND 170 1097 174 COLOUR_TEXT_REGION 170 1097 174 1097 51 HELIX 5 1097 15 COLOUR_TEXT_REGION 5 1097 15 1097 50 HELIX 28 1097 28 COLOUR_TEXT_REGION 28 1097 28 1097 50 HELIX 147 1097 149 COLOUR_TEXT_REGION 147 1097 149 1097 50 HELIX 157 1097 165 COLOUR_TEXT_REGION 157 1097 165 1097 50 STRAND 22 1102 26 COLOUR_TEXT_REGION 22 1102 26 1102 51 STRAND 33 1102 34 COLOUR_TEXT_REGION 33 1102 34 1102 51 STRAND 55 1102 59 COLOUR_TEXT_REGION 55 1102 59 1102 51 STRAND 71 1102 79 COLOUR_TEXT_REGION 71 1102 79 1102 51 STRAND 93 1102 98 COLOUR_TEXT_REGION 93 1102 98 1102 51 STRAND 109 1102 118 COLOUR_TEXT_REGION 109 1102 118 1102 51 STRAND 122 1102 126 COLOUR_TEXT_REGION 122 1102 126 1102 51 STRAND 148 1102 148 COLOUR_TEXT_REGION 148 1102 148 1102 51 STRAND 170 1102 174 COLOUR_TEXT_REGION 170 1102 174 1102 51 HELIX 5 1102 15 COLOUR_TEXT_REGION 5 1102 15 1102 50 HELIX 157 1102 165 COLOUR_TEXT_REGION 157 1102 165 1102 50 STRAND 22 1103 25 COLOUR_TEXT_REGION 22 1103 25 1103 51 STRAND 33 1103 35 COLOUR_TEXT_REGION 33 1103 35 1103 51 STRAND 39 1103 39 COLOUR_TEXT_REGION 39 1103 39 1103 51 STRAND 54 1103 58 COLOUR_TEXT_REGION 54 1103 58 1103 51 STRAND 71 1103 77 COLOUR_TEXT_REGION 71 1103 77 1103 51 STRAND 94 1103 98 COLOUR_TEXT_REGION 94 1103 98 1103 51 STRAND 109 1103 113 COLOUR_TEXT_REGION 109 1103 113 1103 51 STRAND 122 1103 127 COLOUR_TEXT_REGION 122 1103 127 1103 51 STRAND 135 1103 136 COLOUR_TEXT_REGION 135 1103 136 1103 51 STRAND 170 1103 174 COLOUR_TEXT_REGION 170 1103 174 1103 51 HELIX 5 1103 14 COLOUR_TEXT_REGION 5 1103 14 1103 50 HELIX 26 1103 29 COLOUR_TEXT_REGION 26 1103 29 1103 50 HELIX 141 1103 144 COLOUR_TEXT_REGION 141 1103 144 1103 50 HELIX 146 1103 150 COLOUR_TEXT_REGION 146 1103 150 1103 50 HELIX 157 1103 165 COLOUR_TEXT_REGION 157 1103 165 1103 50