SILENT_MODE BLOCK_FILE jp_QTWtYWc.concise.blc MAX_NSEQ 1249 MAX_INPUT_LEN 1251 OUTPUT_FILE jp_QTWtYWc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 118 1238 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1239 118 1248 H SPACE SUB_CHARS 1 1239 118 1248 E SPACE SUB_CHARS 1 1239 118 1248 - SPACE STRAND 3 1242 7 COLOUR_TEXT_REGION 3 1242 7 1242 51 STRAND 25 1242 32 COLOUR_TEXT_REGION 25 1242 32 1242 51 STRAND 43 1242 45 COLOUR_TEXT_REGION 43 1242 45 1242 51 STRAND 50 1242 57 COLOUR_TEXT_REGION 50 1242 57 1242 51 STRAND 76 1242 81 COLOUR_TEXT_REGION 76 1242 81 1242 51 STRAND 86 1242 92 COLOUR_TEXT_REGION 86 1242 92 1242 51 HELIX 60 1242 68 COLOUR_TEXT_REGION 60 1242 68 1242 50 HELIX 106 1242 112 COLOUR_TEXT_REGION 106 1242 112 1242 50 STRAND 2 1247 7 COLOUR_TEXT_REGION 2 1247 7 1247 51 STRAND 25 1247 32 COLOUR_TEXT_REGION 25 1247 32 1247 51 STRAND 43 1247 45 COLOUR_TEXT_REGION 43 1247 45 1247 51 STRAND 50 1247 58 COLOUR_TEXT_REGION 50 1247 58 1247 51 STRAND 76 1247 81 COLOUR_TEXT_REGION 76 1247 81 1247 51 STRAND 87 1247 92 COLOUR_TEXT_REGION 87 1247 92 1247 51 HELIX 60 1247 68 COLOUR_TEXT_REGION 60 1247 68 1247 50 HELIX 106 1247 111 COLOUR_TEXT_REGION 106 1247 111 1247 50 STRAND 3 1248 6 COLOUR_TEXT_REGION 3 1248 6 1248 51 STRAND 25 1248 32 COLOUR_TEXT_REGION 25 1248 32 1248 51 STRAND 35 1248 36 COLOUR_TEXT_REGION 35 1248 36 1248 51 STRAND 43 1248 46 COLOUR_TEXT_REGION 43 1248 46 1248 51 STRAND 50 1248 57 COLOUR_TEXT_REGION 50 1248 57 1248 51 STRAND 76 1248 81 COLOUR_TEXT_REGION 76 1248 81 1248 51 STRAND 86 1248 92 COLOUR_TEXT_REGION 86 1248 92 1248 51 HELIX 16 1248 16 COLOUR_TEXT_REGION 16 1248 16 1248 50 HELIX 18 1248 19 COLOUR_TEXT_REGION 18 1248 19 1248 50 HELIX 60 1248 68 COLOUR_TEXT_REGION 60 1248 68 1248 50 HELIX 106 1248 113 COLOUR_TEXT_REGION 106 1248 113 1248 50