SILENT_MODE
BLOCK_FILE jp_NOt4NHS.concise.blc
MAX_NSEQ 124
MAX_INPUT_LEN 126
OUTPUT_FILE jp_NOt4NHS.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 60 113   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 114 60 123 H SPACE
SUB_CHARS 1 114 60 123 E SPACE
SUB_CHARS 1 114 60 123 - SPACE
STRAND 15 117 19
COLOUR_TEXT_REGION 15 117 19 117 51
STRAND 27 117 33
COLOUR_TEXT_REGION 27 117 33 117 51
STRAND 37 117 42
COLOUR_TEXT_REGION 37 117 42 117 51
STRAND 48 117 55
COLOUR_TEXT_REGION 48 117 55 117 51
HELIX 3 117 11
COLOUR_TEXT_REGION 3 117 11 117 50
STRAND 15 122 19
COLOUR_TEXT_REGION 15 122 19 122 51
STRAND 27 122 33
COLOUR_TEXT_REGION 27 122 33 122 51
STRAND 37 122 42
COLOUR_TEXT_REGION 37 122 42 122 51
STRAND 48 122 55
COLOUR_TEXT_REGION 48 122 55 122 51
HELIX 3 122 11
COLOUR_TEXT_REGION 3 122 11 122 50
STRAND 15 123 19
COLOUR_TEXT_REGION 15 123 19 123 51
STRAND 27 123 33
COLOUR_TEXT_REGION 27 123 33 123 51
STRAND 37 123 42
COLOUR_TEXT_REGION 37 123 42 123 51
STRAND 48 123 55
COLOUR_TEXT_REGION 48 123 55 123 51
HELIX 4 123 12
COLOUR_TEXT_REGION 4 123 12 123 50