SILENT_MODE BLOCK_FILE jp_WxEFzZC.concise.blc MAX_NSEQ 852 MAX_INPUT_LEN 854 OUTPUT_FILE jp_WxEFzZC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 257 841 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 842 257 851 H SPACE SUB_CHARS 1 842 257 851 E SPACE SUB_CHARS 1 842 257 851 - SPACE STRAND 23 845 28 COLOUR_TEXT_REGION 23 845 28 845 51 STRAND 61 845 63 COLOUR_TEXT_REGION 61 845 63 845 51 STRAND 84 845 87 COLOUR_TEXT_REGION 84 845 87 845 51 STRAND 111 845 116 COLOUR_TEXT_REGION 111 845 116 845 51 STRAND 145 845 149 COLOUR_TEXT_REGION 145 845 149 845 51 HELIX 10 845 18 COLOUR_TEXT_REGION 10 845 18 845 50 HELIX 43 845 57 COLOUR_TEXT_REGION 43 845 57 845 50 HELIX 90 845 106 COLOUR_TEXT_REGION 90 845 106 845 50 HELIX 122 845 137 COLOUR_TEXT_REGION 122 845 137 845 50 HELIX 158 845 165 COLOUR_TEXT_REGION 158 845 165 845 50 HELIX 179 845 188 COLOUR_TEXT_REGION 179 845 188 845 50 HELIX 233 845 253 COLOUR_TEXT_REGION 233 845 253 845 50 STRAND 23 850 28 COLOUR_TEXT_REGION 23 850 28 850 51 STRAND 61 850 63 COLOUR_TEXT_REGION 61 850 63 850 51 STRAND 84 850 87 COLOUR_TEXT_REGION 84 850 87 850 51 STRAND 111 850 116 COLOUR_TEXT_REGION 111 850 116 850 51 STRAND 145 850 149 COLOUR_TEXT_REGION 145 850 149 850 51 HELIX 10 850 17 COLOUR_TEXT_REGION 10 850 17 850 50 HELIX 43 850 57 COLOUR_TEXT_REGION 43 850 57 850 50 HELIX 90 850 106 COLOUR_TEXT_REGION 90 850 106 850 50 HELIX 122 850 136 COLOUR_TEXT_REGION 122 850 136 850 50 HELIX 159 850 164 COLOUR_TEXT_REGION 159 850 164 850 50 HELIX 179 850 188 COLOUR_TEXT_REGION 179 850 188 850 50 HELIX 233 850 253 COLOUR_TEXT_REGION 233 850 253 850 50 STRAND 3 851 4 COLOUR_TEXT_REGION 3 851 4 851 51 STRAND 23 851 28 COLOUR_TEXT_REGION 23 851 28 851 51 STRAND 61 851 63 COLOUR_TEXT_REGION 61 851 63 851 51 STRAND 66 851 67 COLOUR_TEXT_REGION 66 851 67 851 51 STRAND 84 851 87 COLOUR_TEXT_REGION 84 851 87 851 51 STRAND 111 851 115 COLOUR_TEXT_REGION 111 851 115 851 51 STRAND 144 851 149 COLOUR_TEXT_REGION 144 851 149 851 51 STRAND 212 851 212 COLOUR_TEXT_REGION 212 851 212 851 51 HELIX 10 851 18 COLOUR_TEXT_REGION 10 851 18 851 50 HELIX 43 851 57 COLOUR_TEXT_REGION 43 851 57 851 50 HELIX 90 851 106 COLOUR_TEXT_REGION 90 851 106 851 50 HELIX 123 851 137 COLOUR_TEXT_REGION 123 851 137 851 50 HELIX 158 851 165 COLOUR_TEXT_REGION 158 851 165 851 50 HELIX 179 851 189 COLOUR_TEXT_REGION 179 851 189 851 50 HELIX 233 851 253 COLOUR_TEXT_REGION 233 851 253 851 50