SILENT_MODE BLOCK_FILE jp_qM9liem.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_qM9liem.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 78 8 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 9 78 18 H SPACE SUB_CHARS 1 9 78 18 E SPACE SUB_CHARS 1 9 78 18 - SPACE STRAND 30 12 33 COLOUR_TEXT_REGION 30 12 33 12 51 STRAND 37 12 42 COLOUR_TEXT_REGION 37 12 42 12 51 STRAND 55 12 60 COLOUR_TEXT_REGION 55 12 60 12 51 HELIX 11 12 21 COLOUR_TEXT_REGION 11 12 21 12 50 HELIX 25 12 25 COLOUR_TEXT_REGION 25 12 25 12 50 HELIX 64 12 74 COLOUR_TEXT_REGION 64 12 74 12 50 STRAND 30 17 33 COLOUR_TEXT_REGION 30 17 33 17 51 STRAND 37 17 42 COLOUR_TEXT_REGION 37 17 42 17 51 STRAND 52 17 60 COLOUR_TEXT_REGION 52 17 60 17 51 HELIX 4 17 5 COLOUR_TEXT_REGION 4 17 5 17 50 HELIX 11 17 21 COLOUR_TEXT_REGION 11 17 21 17 50 HELIX 64 17 73 COLOUR_TEXT_REGION 64 17 73 17 50 STRAND 30 18 33 COLOUR_TEXT_REGION 30 18 33 18 51 STRAND 37 18 42 COLOUR_TEXT_REGION 37 18 42 18 51 STRAND 47 18 48 COLOUR_TEXT_REGION 47 18 48 18 51 STRAND 55 18 60 COLOUR_TEXT_REGION 55 18 60 18 51 HELIX 11 18 26 COLOUR_TEXT_REGION 11 18 26 18 50 HELIX 63 18 76 COLOUR_TEXT_REGION 63 18 76 18 50