QUERY           : GFERTFGAFPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLKVGSLSIPQLRVEVEGEEAERWFERIAFAASR : QUERY 
UniRef90_B7A9C5 : -------ALPPWLFEAYLCSWGGEKEAEGVFRLPGARVRFAEAPPLEVGSLRIPRLRVEVEGEAAEAWWGRIALAASR : UniRef90_B7A9C5
UniRef90_K7QW71 : -FRQDYGGLPAWLLEEYLRSWGGAKEGEGVYRLKGAWVRFFEVEPLQVGRLSVPRLRVEVEGEEGEAWAGRIALAASR : UniRef90_K7QW71
UniRef90_E8PR42 : -FAQRFGALPAWLLERYLSEWGGRKLEEGVYALPGARVRFAEAEPLRVGSLSLPQLQVEVEGEEAEAWFQRIQLAAAR : UniRef90_E8PR42
UniRef90_E4U9C5 : -WRAELGGVSPWLLADYLRRWGAVEADDG-WRVDGAWVRFRALPPRVVGGLRTSRLEVEVGGAEARRWAERISVGAMR : UniRef90_E4U9C5

                : 1---------11--------21--------31--------41--------51--------61--------71------ :
OrigSeq         : GFERTFGAFPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLKVGSLSIPQLRVEVEGEEAERWFERIAFAASR : OrigSeq

Jnet            : ----------HHHHHHHHHHH---H----EEEE---EEEEEE------------EEEEEE---HHHHHHHHHHH---- : Jnet
jhmm            : ---HH-----HHHHHHHHHHH--------EEEE---EEEEEE---------EEEEEEEEE---HHHHHHHHHH----- : jhmm
jpssm           : ----------HHHHHHHHHHHHHHHH---EEEE---EEEEEE----EE------EEEEEE--HHHHHHHHHHHHHH-- : jpssm

Lupas 14        : ------------------------------------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------ : Lupas 28

Jnet_25         : -----BBBBBBBBB--BB--B-------BBB-B-BB-BBB--B-B--BB-B-B--B-B-B-B--B--BB-BBBBBB-- : Jnet_25
Jnet_5          : --------B---BB--BB--------------B--B-B-B---------------B-----------B---B------ : Jnet_5
Jnet_0          : -----------------B------------------------------------------------------------ : Jnet_0
Jnet Rel        : 999325666368999999985131025865886471699984452123366111377763421489999998511479 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.