QUERY : GFERTFGAFPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLKVGSLSIPQLRVEVEGEEAERWFERIAFAASR : QUERY
UniRef90_B7A9C5 : -------ALPPWLFEAYLCSWGGEKEAEGVFRLPGARVRFAEAPPLEVGSLRIPRLRVEVEGEAAEAWWGRIALAASR : UniRef90_B7A9C5
UniRef90_K7QW71 : -FRQDYGGLPAWLLEEYLRSWGGAKEGEGVYRLKGAWVRFFEVEPLQVGRLSVPRLRVEVEGEEGEAWAGRIALAASR : UniRef90_K7QW71
UniRef90_E8PR42 : -FAQRFGALPAWLLERYLSEWGGRKLEEGVYALPGARVRFAEAEPLRVGSLSLPQLQVEVEGEEAEAWFQRIQLAAAR : UniRef90_E8PR42
UniRef90_E4U9C5 : -WRAELGGVSPWLLADYLRRWGAVEADDG-WRVDGAWVRFRALPPRVVGGLRTSRLEVEVGGAEARRWAERISVGAMR : UniRef90_E4U9C5
: 1---------11--------21--------31--------41--------51--------61--------71------ :
OrigSeq : GFERTFGAFPPWLLERYLEEWGGTREGEGVYRLPGAVVRFREVEPLKVGSLSIPQLRVEVEGEEAERWFERIAFAASR : OrigSeq
Jnet : ----------HHHHHHHHHHH---H----EEEE---EEEEEE------------EEEEEE---HHHHHHHHHHH---- : Jnet
jhmm : ---HH-----HHHHHHHHHHH--------EEEE---EEEEEE---------EEEEEEEEE---HHHHHHHHHH----- : jhmm
jpssm : ----------HHHHHHHHHHHHHHHH---EEEE---EEEEEE----EE------EEEEEE--HHHHHHHHHHHHHH-- : jpssm
Lupas 14 : ------------------------------------------------------------------------------ : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : -----BBBBBBBBB--BB--B-------BBB-B-BB-BBB--B-B--BB-B-B--B-B-B-B--B--BB-BBBBBB-- : Jnet_25
Jnet_5 : --------B---BB--BB--------------B--B-B-B---------------B-----------B---B------ : Jnet_5
Jnet_0 : -----------------B------------------------------------------------------------ : Jnet_0
Jnet Rel : 999325666368999999985131025865886471699984452123366111377763421489999998511479 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.