SILENT_MODE BLOCK_FILE jp_KPqpBuQ.concise.blc MAX_NSEQ 945 MAX_INPUT_LEN 947 OUTPUT_FILE jp_KPqpBuQ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 312 934 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 935 312 944 H SPACE SUB_CHARS 1 935 312 944 E SPACE SUB_CHARS 1 935 312 944 - SPACE STRAND 5 938 6 COLOUR_TEXT_REGION 5 938 6 938 51 HELIX 7 938 12 COLOUR_TEXT_REGION 7 938 12 938 50 HELIX 18 938 25 COLOUR_TEXT_REGION 18 938 25 938 50 HELIX 29 938 37 COLOUR_TEXT_REGION 29 938 37 938 50 HELIX 50 938 71 COLOUR_TEXT_REGION 50 938 71 938 50 HELIX 76 938 100 COLOUR_TEXT_REGION 76 938 100 938 50 HELIX 117 938 125 COLOUR_TEXT_REGION 117 938 125 938 50 HELIX 130 938 137 COLOUR_TEXT_REGION 130 938 137 938 50 HELIX 141 938 152 COLOUR_TEXT_REGION 141 938 152 938 50 HELIX 157 938 198 COLOUR_TEXT_REGION 157 938 198 938 50 HELIX 216 938 223 COLOUR_TEXT_REGION 216 938 223 938 50 HELIX 226 938 234 COLOUR_TEXT_REGION 226 938 234 938 50 HELIX 247 938 266 COLOUR_TEXT_REGION 247 938 266 938 50 HELIX 272 938 297 COLOUR_TEXT_REGION 272 938 297 938 50 HELIX 302 938 308 COLOUR_TEXT_REGION 302 938 308 938 50 STRAND 5 943 6 COLOUR_TEXT_REGION 5 943 6 943 51 HELIX 7 943 12 COLOUR_TEXT_REGION 7 943 12 943 50 HELIX 18 943 25 COLOUR_TEXT_REGION 18 943 25 943 50 HELIX 29 943 37 COLOUR_TEXT_REGION 29 943 37 943 50 HELIX 50 943 71 COLOUR_TEXT_REGION 50 943 71 943 50 HELIX 76 943 100 COLOUR_TEXT_REGION 76 943 100 943 50 HELIX 117 943 125 COLOUR_TEXT_REGION 117 943 125 943 50 HELIX 129 943 136 COLOUR_TEXT_REGION 129 943 136 943 50 HELIX 142 943 152 COLOUR_TEXT_REGION 142 943 152 943 50 HELIX 157 943 198 COLOUR_TEXT_REGION 157 943 198 943 50 HELIX 216 943 223 COLOUR_TEXT_REGION 216 943 223 943 50 HELIX 226 943 234 COLOUR_TEXT_REGION 226 943 234 943 50 HELIX 240 943 241 COLOUR_TEXT_REGION 240 943 241 943 50 HELIX 247 943 267 COLOUR_TEXT_REGION 247 943 267 943 50 HELIX 272 943 297 COLOUR_TEXT_REGION 272 943 297 943 50 HELIX 302 943 308 COLOUR_TEXT_REGION 302 943 308 943 50 HELIX 6 944 12 COLOUR_TEXT_REGION 6 944 12 944 50 HELIX 18 944 26 COLOUR_TEXT_REGION 18 944 26 944 50 HELIX 29 944 37 COLOUR_TEXT_REGION 29 944 37 944 50 HELIX 50 944 71 COLOUR_TEXT_REGION 50 944 71 944 50 HELIX 77 944 100 COLOUR_TEXT_REGION 77 944 100 944 50 HELIX 117 944 125 COLOUR_TEXT_REGION 117 944 125 944 50 HELIX 132 944 138 COLOUR_TEXT_REGION 132 944 138 944 50 HELIX 141 944 152 COLOUR_TEXT_REGION 141 944 152 944 50 HELIX 157 944 198 COLOUR_TEXT_REGION 157 944 198 944 50 HELIX 216 944 223 COLOUR_TEXT_REGION 216 944 223 944 50 HELIX 227 944 234 COLOUR_TEXT_REGION 227 944 234 944 50 HELIX 247 944 265 COLOUR_TEXT_REGION 247 944 265 944 50 HELIX 272 944 297 COLOUR_TEXT_REGION 272 944 297 944 50 HELIX 302 944 308 COLOUR_TEXT_REGION 302 944 308 944 50