SILENT_MODE BLOCK_FILE jp_lLYnWH_.concise.blc MAX_NSEQ 990 MAX_INPUT_LEN 992 OUTPUT_FILE jp_lLYnWH_.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 203 979 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 980 203 989 H SPACE SUB_CHARS 1 980 203 989 E SPACE SUB_CHARS 1 980 203 989 - SPACE STRAND 45 983 52 COLOUR_TEXT_REGION 45 983 52 983 51 STRAND 60 983 66 COLOUR_TEXT_REGION 60 983 66 983 51 STRAND 102 983 108 COLOUR_TEXT_REGION 102 983 108 983 51 STRAND 114 983 114 COLOUR_TEXT_REGION 114 983 114 983 51 STRAND 130 983 136 COLOUR_TEXT_REGION 130 983 136 983 51 STRAND 141 983 144 COLOUR_TEXT_REGION 141 983 144 983 51 STRAND 179 983 192 COLOUR_TEXT_REGION 179 983 192 983 51 STRAND 198 983 200 COLOUR_TEXT_REGION 198 983 200 983 51 HELIX 5 983 24 COLOUR_TEXT_REGION 5 983 24 983 50 HELIX 71 983 86 COLOUR_TEXT_REGION 71 983 86 983 50 HELIX 156 983 166 COLOUR_TEXT_REGION 156 983 166 983 50 STRAND 45 988 51 COLOUR_TEXT_REGION 45 988 51 988 51 STRAND 61 988 61 COLOUR_TEXT_REGION 61 988 61 988 51 STRAND 63 988 68 COLOUR_TEXT_REGION 63 988 68 988 51 STRAND 102 988 108 COLOUR_TEXT_REGION 102 988 108 988 51 STRAND 130 988 137 COLOUR_TEXT_REGION 130 988 137 988 51 STRAND 143 988 144 COLOUR_TEXT_REGION 143 988 144 988 51 STRAND 180 988 192 COLOUR_TEXT_REGION 180 988 192 988 51 STRAND 198 988 201 COLOUR_TEXT_REGION 198 988 201 988 51 HELIX 5 988 24 COLOUR_TEXT_REGION 5 988 24 988 50 HELIX 72 988 85 COLOUR_TEXT_REGION 72 988 85 988 50 HELIX 156 988 166 COLOUR_TEXT_REGION 156 988 166 988 50 STRAND 45 989 53 COLOUR_TEXT_REGION 45 989 53 989 51 STRAND 60 989 63 COLOUR_TEXT_REGION 60 989 63 989 51 STRAND 101 989 108 COLOUR_TEXT_REGION 101 989 108 989 51 STRAND 113 989 114 COLOUR_TEXT_REGION 113 989 114 989 51 STRAND 130 989 135 COLOUR_TEXT_REGION 130 989 135 989 51 STRAND 140 989 144 COLOUR_TEXT_REGION 140 989 144 989 51 STRAND 179 989 192 COLOUR_TEXT_REGION 179 989 192 989 51 STRAND 198 989 200 COLOUR_TEXT_REGION 198 989 200 989 51 HELIX 5 989 24 COLOUR_TEXT_REGION 5 989 24 989 50 HELIX 70 989 86 COLOUR_TEXT_REGION 70 989 86 989 50 HELIX 156 989 166 COLOUR_TEXT_REGION 156 989 166 989 50