SILENT_MODE
BLOCK_FILE jp_GF5RrOq.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_GF5RrOq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 77 22   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 23 77 32 H SPACE
SUB_CHARS 1 23 77 32 E SPACE
SUB_CHARS 1 23 77 32 - SPACE
STRAND 5 26 5
COLOUR_TEXT_REGION 5 26 5 26 51
STRAND 43 26 47
COLOUR_TEXT_REGION 43 26 47 26 51
STRAND 57 26 63
COLOUR_TEXT_REGION 57 26 63 26 51
STRAND 68 26 72
COLOUR_TEXT_REGION 68 26 72 26 51
HELIX 4 26 4
COLOUR_TEXT_REGION 4 26 4 26 50
HELIX 27 26 33
COLOUR_TEXT_REGION 27 26 33 26 50
HELIX 49 26 53
COLOUR_TEXT_REGION 49 26 53 26 50
STRAND 5 31 5
COLOUR_TEXT_REGION 5 31 5 31 51
STRAND 43 31 46
COLOUR_TEXT_REGION 43 31 46 31 51
STRAND 57 31 63
COLOUR_TEXT_REGION 57 31 63 31 51
STRAND 68 31 72
COLOUR_TEXT_REGION 68 31 72 31 51
HELIX 4 31 4
COLOUR_TEXT_REGION 4 31 4 31 50
HELIX 27 31 33
COLOUR_TEXT_REGION 27 31 33 31 50
HELIX 47 31 47
COLOUR_TEXT_REGION 47 31 47 31 50
HELIX 49 31 54
COLOUR_TEXT_REGION 49 31 54 31 50
STRAND 4 32 5
COLOUR_TEXT_REGION 4 32 5 32 51
STRAND 12 32 12
COLOUR_TEXT_REGION 12 32 12 32 51
STRAND 43 32 47
COLOUR_TEXT_REGION 43 32 47 32 51
STRAND 57 32 62
COLOUR_TEXT_REGION 57 32 62 32 51
STRAND 68 32 73
COLOUR_TEXT_REGION 68 32 73 32 51
HELIX 26 32 32
COLOUR_TEXT_REGION 26 32 32 32 50
HELIX 49 32 53
COLOUR_TEXT_REGION 49 32 53 32 50