QUERY           : MRALFYKDGKLFTDNNFLNPVSDDNPAYEVLQHVKIPTHLTDVVVYEQTWEEALTRLIFVGSDSKGRRQYFYGKMHV : QUERY 
UniRef90_Q6TVQ8 : MRALHLSDGKLFFDKELTQPVPDDNPAYAVLAKIRIPPHLSDVVVYEQDLESAQQGLIFVGRDAKGRKQYFYGRGHV : UniRef90_Q6TVQ8
UniRef90_U3UBD1 : MRGLFLRNGKLFFDKECTRAVPNSNPAYEVLKNVRIPPHLTDVVVYEQTYEQALGGLIFVGTDAKGRRQYFYGKMHV : UniRef90_U3UBD1
UniRef90_Q98254 : -RFFFYKDGELFHDRKCTRRVSRSNATYEVLRHVRIPAHLHDVRVLEQTYEQAQRGLVFVGLDSKQRAQYFYGKLHV : UniRef90_Q98254
UniRef90_P16472 : MRAFTYKDGKLYEDKELTIPVHCSNPTYEILKHVKIPSHLTDVIVYEQTYEQSLSRLIFVGLDSKGRRQYFYGKMHV : UniRef90_P16472
UniRef90_Q77GC6 : MRGLFYNDGKLFTDKNLTTLVSFDNPTYEIIKRIRIPPHLTDVIVYEQTYEQSLTRLIFVGSDSKGRRQYFYGKLHV : UniRef90_Q77GC6
UniRef90_Q08FR6 : MRRFSYKDGKLFFDKEFKHIVPYDNKTYEILRHVKIPPHLTDVIIYEQSYEQSLTGLIFVGSDSKGRRQYFYGKLHI : UniRef90_Q08FR6
UniRef90_G3EIG2 : MRELFYKEGKLFFDNKFLNPVPDNNLAYDVLKHIKIPAYLTDVIVYEQTWDDALSGLIFVGRDSKGRKQYFYGKLHV : UniRef90_G3EIG2
UniRef90_Q6TUT8 : MKGLYYNDGKLFEDKELTMSVSSDNPAYEILKKIKIPSYLTDVVVYEQTYDESLNRLIFVGSDSKGKRQYFYGKLHV : UniRef90_Q6TUT8
UniRef90_Q070E5 : -RFLFYLEGVLYYDADRTRRVEDSNPTYDVVARVKIPAHLTDVAFVEQTLEESARGLIFIGYDSKSRKQYFYGKLHV : UniRef90_Q070E5
UniRef90_Q8V3M1 : MRAFLYYDGKLFFDTDLTKQVPYDNPTYDILKYIKIPNHLTNVMVYEQTYEQSLHRLIFVGTDSKGRKQYFYGKLHV : UniRef90_Q8V3M1
UniRef90_H6TA67 : MRRLYYKLGKLFLDKDLTIHVKGDNPAYEILEHIKIPEHLTDVIIYEQTYEQSLTGLIFVGKDSKGRTQYFYGKLHV : UniRef90_H6TA67
UniRef90_Q6VZF8 : -QILYYKEGKLYYDNAYKKRVPISNPTYEILKRYKIPTYLKDIIIYEQTYEEALNSLIFVGIDSKGRKQYFYGKNHI : UniRef90_Q6VZF8
UniRef90_Q9J587 : --FFHYKDDKLYYDAAYKNLVPASNKTYEIIKAYRVPPHLKEVIVYEQSLEEASNSLIFIGVDSKGRKQYFYGKNHV : UniRef90_Q9J587
UniRef90_W6JIX1 : --------GKLYDSNDKL---VTKKELYNIINKYKVPSHLHDVTLVANNISEADNGIIYIGLDSKNKKQYIYGINFI : UniRef90_W6JIX1
UniRef90_R4ZE84 : ------KDGKIYNSSQEIL----DTKLKNIIEKYKPPKHLNNIQLIAKNISEADNGIIYIGSDSKNKKQYIYGINYI : UniRef90_R4ZE84
UniRef90_Q9YVW2 : -------NNKIYDDKNNEIINEELNK---IIIKYKPPSHLHDIKLIAKNIKEADNGIVYIGLDSTNKKQYIYGINFV : UniRef90_Q9YVW2
UniRef90_P87507 : ------------------QEIVDDNLL-NIIKKYKPPKHLNNIELIAKNIEEADNGIIYIGIDSKNKKQYIYGINYV : UniRef90_P87507
UniRef90_I3YUU6 : ------KHGKGFTHKDSTGKTVKDKATRNWIKSLVIPPAWTDVEISEN--RKAD--LLVTGRDDKDRKQYIYSAKH- : UniRef90_I3YUU6

                : 1---------11--------21--------31--------41--------51--------61--------71----- :
OrigSeq         : MRALFYKDGKLFTDNNFLNPVSDDNPAYEVLQHVKIPTHLTDVVVYEQTWEEALTRLIFVGSDSKGRRQYFYGKMHV : OrigSeq

Jnet            : ---HE---------------------HHHHHHH---------EEEEE-HHHHH---EEEEEEE----EEEEE----- : Jnet
jhmm            : ---HE---------------------HHHHHHH---------EEEEH-HHHHHH--EEEEEEE----EEEEE----- : jhmm
jpssm           : ---EE------E-------------HHHHHHH----------EEEEE-HHHHH---EEEEEE-----EEEEEE---- : jpssm

Lupas 14        : ----------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---BBB----BB-B--B---B-----BB-BB--B-BB-BB--BBBBB--B--BB-BBBBBBBB-----BBBBB---- : Jnet_25
Jnet_5          : ---B------B---------------B--BB-----------B-B-----------BBBBB---------B------ : Jnet_5
Jnet_0          : ---------------------------------------------------------B--B---------------- : Jnet_0
Jnet Rel        : 83102267751023565567777630888775267887777336761214430265489986088845788626899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.