QUERY : VLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILE : QUERY
UniRef90_UPI0003C27D3E : VLQILDRLQMKLHEKGDTSQSEKLTILHNTLRSPLFNQILTLQQSIKQLKEQLNYM-- : UniRef90_UPI0003C27D3E
UniRef90_UPI00045739DE : ALQALERLQAKLRERGDVVNEEKLNLLRSVLQSPLFNQILNLQSSVQQLKDQVNTM-- : UniRef90_UPI00045739DE
UniRef90_UPI0004435BD2 : ILQVLERLQMKLQDRGDTSQNEKLALFCETLKSPLFNQILTIQQSIRQLKGQLSHI-- : UniRef90_UPI0004435BD2
UniRef90_UPI0003C12EEC : VLQAIDRLKTKLREKGDTSQTEKLNILHDTVQSPLFNQILTIQHSIKQLKEQLNRM-- : UniRef90_UPI0003C12EEC
UniRef90_UPI0003EC4C4B : ALQAVERLQAKLKERGEVPTEEKLSLLKSVLQSPLFHQILALQKSVQHLRDQGRYV-- : UniRef90_UPI0003EC4C4B
UniRef90_K7G0F4 : ALQAVERLHMKLRERGDIANEEKLSLLKSVLQSPLFSQILNLQTSVHQLKDQVN---- : UniRef90_K7G0F4
UniRef90_UPI00020390E5 : VLQILEHLLMKLHERGDTSHSENLAFLYNTLKNPLFNHMLTLQQSIKQLKEQLTYL-- : UniRef90_UPI00020390E5
UniRef90_UPI00045760D0 : VLEALDRLQARLRERGESQQQEKLNLLHQTMRSPLFNQILTLQHSIRHLKEQLNSL-- : UniRef90_UPI00045760D0
UniRef90_UPI0003EAAD9E : ALQAVERLQAKLKERGDVLTEEKLNMLKTVLQSPLFQQILTLQTSVQQLKEQGS---- : UniRef90_UPI0003EAAD9E
UniRef90_K7E7G9 : ILQVLDRLQAKLQERGDVSQEEKLSLFGDALRSPLFDQILTLQRSIRQLKEQL----- : UniRef90_K7E7G9
UniRef90_F6REK9 : VLLIAERLQKKLKDKGDLSHHEKMCILRDTLKSPLFNQILTVQQSIKQLKEQVSTII- : UniRef90_F6REK9
UniRef90_UPI0003501566 : ALQAVERLQVKVRERGDIANEEKLCLLKSVLQSPLFNQILSLQTSLQHLREQVN---- : UniRef90_UPI0003501566
UniRef90_UPI000440D9D8 : -LQAVERLQARLKERGDVPSDEKLSLLKSVLQSPLFHQILTLQKSVQHLKEQV----- : UniRef90_UPI000440D9D8
UniRef90_UPI0003F0BDE2 : ALQAAERLQAKLRERGDVANEDKLNLLKSVLQSPLFSQIVHLQASMQHLDDQVNS--- : UniRef90_UPI0003F0BDE2
UniRef90_UPI0003EA80E1 : VLQALERLQSKLKDRDDRTHSERLGALRDALRSPLLGHILTLQHSIKQLKEQ------ : UniRef90_UPI0003EA80E1
UniRef90_UPI00034FA4AF : VLQVLQRLRAKLQDRGDTSQHSTLSAFCDTLQSPLFTQILALQKSLRQLKGQLSH--- : UniRef90_UPI00034FA4AF
UniRef90_M7BL83 : ---------MKLRERGETSQNENLTILCNTLRSPLFNQILTLQQSIKQLKEQLNYM-- : UniRef90_M7BL83
UniRef90_H2LES7 : VLGALERLRAKLVQREEWTHSDRLANLQVALQSPLFSHILTLQHSIKQLRDQLSDM-- : UniRef90_H2LES7
UniRef90_S9X5I4 : ---------MKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLSHI-- : UniRef90_S9X5I4
UniRef90_H2LIZ8 : ALEAVERLQAKLKERGETPTQDKLSLLKTVLQSPLFLHILSLQESQRNPPAKVSH--- : UniRef90_H2LIZ8
UniRef90_Q4SXL4 : VLGALERLQTKLVQREEWSHSGAVGTLRQTLQSPLLSHILTLQQSIRQLRNQLTLM-- : UniRef90_Q4SXL4
UniRef90_UPI00044471DB : VLAALDRLQNRLVHREEWSLSAALGSLKEALQSPLFGRVLTLQHSVRQLQQQLSSL-- : UniRef90_UPI00044471DB
UniRef90_UPI0003BCA51C : ALAAVERLQAKLKERGEAPTQEKLSLLKTVLQSPLFLHILTLQQAQQKP--------- : UniRef90_UPI0003BCA51C
UniRef90_A8DZE1 : VLQALERLQSKLVQREEWTHSDRLGTLKEALQSPLFSHILTLQHSVKQLKDQV----- : UniRef90_A8DZE1
UniRef90_UPI000383638F : ALVAVERLQERLRKRGELPAEEKLSLLKSVLQSPLFHQILIMQETGQQRKQQ------ : UniRef90_UPI000383638F
UniRef90_K1R7T1 : AVEYVEHLQTRLWDQGDHSMDDDLTSLLAMMESPLFRQILNLQESLQELKQ------- : UniRef90_K1R7T1
UniRef90_H2YMG8 : AAVVLKRLQNQLKRQGDYSHDAELDAMKSLMESPLFKKMVQLQASIQQLKKEAS---- : UniRef90_H2YMG8
UniRef90_B3S1C8 : ALAVLSKFHNKLKTDGFESHAQNLSKVRDMLQHPVFGHLLNMQSSMGDMIEKV----- : UniRef90_B3S1C8
UniRef90_A7SRG3 : VVQILDGFQRKLESQGDYDNGEDLERIKAMLKSPLFHQLLAVQQSLRELNTQ------ : UniRef90_A7SRG3
UniRef90_UPI00035952D6 : AAEYVEVLQRKLWTRGDHSQDDELSSIIYMLDSPLFKQLLTLQESLQELKH------- : UniRef90_UPI00035952D6
UniRef90_F1MMT3 : ---------------GDAANEDKLNLLKSVLQSPLFSQILNFQTSIQQLKDQVN---- : UniRef90_F1MMT3
UniRef90_UPI0002651B1A : AVSVLQGLQGRLVAAGEPELGEQFASMIDLLASPSFRHLLNLQQSVRELKHHID---- : UniRef90_UPI0002651B1A
UniRef90_V4B4S0 : AADIVDRLKASLQEQGDFHKDDELSSILCMLKSPLFHQLLTLQKSLHKLKE------- : UniRef90_V4B4S0
UniRef90_UPI0003B64A72 : ---------------GEVPTEEKLSLLRSVLQSPLFHQILALQKSVQHLRDQGS---- : UniRef90_UPI0003B64A72
UniRef90_V8PA85 : ILKILERLLMKLHEKGDTSHSDNLAFLYNTLKNPLFNH-------------------- : UniRef90_V8PA85
UniRef90_UPI0003F0EA97 : -------------------------MFYETLRSPLFNQILTLQQSIKQLKGQLSHI-- : UniRef90_UPI0003F0EA97
UniRef90_UPI0002B42D6A : VCDILERFRHNLKSEGNYEHDKDLADMISMLDSPLFKQIVTVHDSLNELNKK------ : UniRef90_UPI0002B42D6A
UniRef90_T1INI3 : ALSLLERIQRQLRASDSIPVSQDLSKLISLLESPVFRNILTIQDSLHELRRQI----- : UniRef90_T1INI3
: 1---------11--------21--------31--------41--------51------ :
OrigSeq : VLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLNHILE : OrigSeq
Jnet : --HHHHHHHHHHHH------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-- : Jnet
jhmm : --HHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-- : jhmm
jpssm : -HHHHHHHHHHHHH------HHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHH-- : jpssm
Lupas 14 : -cccccccccccccc-----------------------cccccccccccccc------ : Lupas 14
Lupas 21 : ---------------------------------------------------------- : Lupas 21
Lupas 28 : ---------------------------------------------------------- : Lupas 28
Jnet_25 : ---BB--B---B-----------B--BB-BB-BBBB--BB-BB-BB--B---B--BB- : Jnet_25
Jnet_5 : ----B--B---------------B--B---B---B---B--B------B---B----- : Jnet_5
Jnet_0 : -------B-------------------------------------------------- : Jnet_0
Jnet Rel : 7189999999986158887478999999987016899999999874246887777339 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.