SILENT_MODE BLOCK_FILE jp_u_9MXra.concise.blc MAX_NSEQ 948 MAX_INPUT_LEN 950 OUTPUT_FILE jp_u_9MXra.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 230 937 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 938 230 947 H SPACE SUB_CHARS 1 938 230 947 E SPACE SUB_CHARS 1 938 230 947 - SPACE STRAND 29 941 30 COLOUR_TEXT_REGION 29 941 30 941 51 STRAND 33 941 36 COLOUR_TEXT_REGION 33 941 36 941 51 STRAND 48 941 49 COLOUR_TEXT_REGION 48 941 49 941 51 STRAND 62 941 66 COLOUR_TEXT_REGION 62 941 66 941 51 STRAND 73 941 74 COLOUR_TEXT_REGION 73 941 74 941 51 STRAND 83 941 86 COLOUR_TEXT_REGION 83 941 86 941 51 STRAND 97 941 97 COLOUR_TEXT_REGION 97 941 97 941 51 STRAND 107 941 111 COLOUR_TEXT_REGION 107 941 111 941 51 STRAND 129 941 136 COLOUR_TEXT_REGION 129 941 136 941 51 STRAND 161 941 166 COLOUR_TEXT_REGION 161 941 166 941 51 STRAND 172 941 178 COLOUR_TEXT_REGION 172 941 178 941 51 STRAND 196 941 203 COLOUR_TEXT_REGION 196 941 203 941 51 STRAND 218 941 219 COLOUR_TEXT_REGION 218 941 219 941 51 HELIX 3 941 11 COLOUR_TEXT_REGION 3 941 11 941 50 HELIX 16 941 25 COLOUR_TEXT_REGION 16 941 25 941 50 HELIX 114 941 123 COLOUR_TEXT_REGION 114 941 123 941 50 HELIX 143 941 151 COLOUR_TEXT_REGION 143 941 151 941 50 HELIX 183 941 191 COLOUR_TEXT_REGION 183 941 191 941 50 HELIX 223 941 228 COLOUR_TEXT_REGION 223 941 228 941 50 STRAND 28 946 30 COLOUR_TEXT_REGION 28 946 30 946 51 STRAND 33 946 35 COLOUR_TEXT_REGION 33 946 35 946 51 STRAND 47 946 50 COLOUR_TEXT_REGION 47 946 50 946 51 STRAND 62 946 66 COLOUR_TEXT_REGION 62 946 66 946 51 STRAND 72 946 75 COLOUR_TEXT_REGION 72 946 75 946 51 STRAND 83 946 85 COLOUR_TEXT_REGION 83 946 85 946 51 STRAND 97 946 98 COLOUR_TEXT_REGION 97 946 98 946 51 STRAND 106 946 111 COLOUR_TEXT_REGION 106 946 111 946 51 STRAND 129 946 136 COLOUR_TEXT_REGION 129 946 136 946 51 STRAND 161 946 166 COLOUR_TEXT_REGION 161 946 166 946 51 STRAND 172 946 179 COLOUR_TEXT_REGION 172 946 179 946 51 STRAND 201 946 203 COLOUR_TEXT_REGION 201 946 203 946 51 STRAND 218 946 220 COLOUR_TEXT_REGION 218 946 220 946 51 HELIX 3 946 10 COLOUR_TEXT_REGION 3 946 10 946 50 HELIX 16 946 25 COLOUR_TEXT_REGION 16 946 25 946 50 HELIX 114 946 122 COLOUR_TEXT_REGION 114 946 122 946 50 HELIX 141 946 151 COLOUR_TEXT_REGION 141 946 151 946 50 HELIX 183 946 191 COLOUR_TEXT_REGION 183 946 191 946 50 HELIX 223 946 228 COLOUR_TEXT_REGION 223 946 228 946 50 STRAND 33 947 37 COLOUR_TEXT_REGION 33 947 37 947 51 STRAND 63 947 65 COLOUR_TEXT_REGION 63 947 65 947 51 STRAND 83 947 86 COLOUR_TEXT_REGION 83 947 86 947 51 STRAND 95 947 96 COLOUR_TEXT_REGION 95 947 96 947 51 STRAND 107 947 111 COLOUR_TEXT_REGION 107 947 111 947 51 STRAND 132 947 137 COLOUR_TEXT_REGION 132 947 137 947 51 STRAND 159 947 161 COLOUR_TEXT_REGION 159 947 161 947 51 STRAND 195 947 204 COLOUR_TEXT_REGION 195 947 204 947 51 STRAND 218 947 219 COLOUR_TEXT_REGION 218 947 219 947 51 HELIX 3 947 11 COLOUR_TEXT_REGION 3 947 11 947 50 HELIX 16 947 26 COLOUR_TEXT_REGION 16 947 26 947 50 HELIX 114 947 125 COLOUR_TEXT_REGION 114 947 125 947 50 HELIX 144 947 147 COLOUR_TEXT_REGION 144 947 147 947 50 HELIX 166 947 171 COLOUR_TEXT_REGION 166 947 171 947 50 HELIX 183 947 192 COLOUR_TEXT_REGION 183 947 192 947 50 HELIX 223 947 228 COLOUR_TEXT_REGION 223 947 228 947 50