SILENT_MODE
BLOCK_FILE jp_oC4EASR.concise.blc
MAX_NSEQ 998
MAX_INPUT_LEN 1000
OUTPUT_FILE jp_oC4EASR.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 167 987   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 988 167 997 H SPACE
SUB_CHARS 1 988 167 997 E SPACE
SUB_CHARS 1 988 167 997 - SPACE
STRAND 18 991 21
COLOUR_TEXT_REGION 18 991 21 991 51
STRAND 43 991 51
COLOUR_TEXT_REGION 43 991 51 991 51
STRAND 56 991 60
COLOUR_TEXT_REGION 56 991 60 991 51
STRAND 102 991 104
COLOUR_TEXT_REGION 102 991 104 991 51
STRAND 112 991 118
COLOUR_TEXT_REGION 112 991 118 991 51
STRAND 126 991 129
COLOUR_TEXT_REGION 126 991 129 991 51
STRAND 136 991 140
COLOUR_TEXT_REGION 136 991 140 991 51
STRAND 156 991 161
COLOUR_TEXT_REGION 156 991 161 991 51
HELIX 4 991 13
COLOUR_TEXT_REGION 4 991 13 991 50
HELIX 29 991 36
COLOUR_TEXT_REGION 29 991 36 991 50
HELIX 69 991 76
COLOUR_TEXT_REGION 69 991 76 991 50
HELIX 86 991 92
COLOUR_TEXT_REGION 86 991 92 991 50
HELIX 119 991 121
COLOUR_TEXT_REGION 119 991 121 991 50
HELIX 142 991 151
COLOUR_TEXT_REGION 142 991 151 991 50
STRAND 19 996 22
COLOUR_TEXT_REGION 19 996 22 996 51
STRAND 43 996 51
COLOUR_TEXT_REGION 43 996 51 996 51
STRAND 56 996 61
COLOUR_TEXT_REGION 56 996 61 996 51
STRAND 103 996 104
COLOUR_TEXT_REGION 103 996 104 996 51
STRAND 113 996 117
COLOUR_TEXT_REGION 113 996 117 996 51
STRAND 127 996 129
COLOUR_TEXT_REGION 127 996 129 996 51
STRAND 136 996 140
COLOUR_TEXT_REGION 136 996 140 996 51
STRAND 156 996 161
COLOUR_TEXT_REGION 156 996 161 996 51
HELIX 4 996 13
COLOUR_TEXT_REGION 4 996 13 996 50
HELIX 29 996 36
COLOUR_TEXT_REGION 29 996 36 996 50
HELIX 69 996 76
COLOUR_TEXT_REGION 69 996 76 996 50
HELIX 86 996 92
COLOUR_TEXT_REGION 86 996 92 996 50
HELIX 118 996 123
COLOUR_TEXT_REGION 118 996 123 996 50
HELIX 142 996 151
COLOUR_TEXT_REGION 142 996 151 996 50
STRAND 18 997 21
COLOUR_TEXT_REGION 18 997 21 997 51
STRAND 44 997 51
COLOUR_TEXT_REGION 44 997 51 997 51
STRAND 56 997 59
COLOUR_TEXT_REGION 56 997 59 997 51
STRAND 100 997 105
COLOUR_TEXT_REGION 100 997 105 997 51
STRAND 112 997 120
COLOUR_TEXT_REGION 112 997 120 997 51
STRAND 126 997 129
COLOUR_TEXT_REGION 126 997 129 997 51
STRAND 136 997 140
COLOUR_TEXT_REGION 136 997 140 997 51
STRAND 156 997 161
COLOUR_TEXT_REGION 156 997 161 997 51
HELIX 3 997 13
COLOUR_TEXT_REGION 3 997 13 997 50
HELIX 29 997 35
COLOUR_TEXT_REGION 29 997 35 997 50
HELIX 41 997 43
COLOUR_TEXT_REGION 41 997 43 997 50
HELIX 69 997 76
COLOUR_TEXT_REGION 69 997 76 997 50
HELIX 86 997 92
COLOUR_TEXT_REGION 86 997 92 997 50
HELIX 142 997 151
COLOUR_TEXT_REGION 142 997 151 997 50