SILENT_MODE
BLOCK_FILE jp_3REbxSp.concise.blc
MAX_NSEQ 791
MAX_INPUT_LEN 793
OUTPUT_FILE jp_3REbxSp.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 143 780   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 781 143 790 H SPACE
SUB_CHARS 1 781 143 790 E SPACE
SUB_CHARS 1 781 143 790 - SPACE
STRAND 3 784 12
COLOUR_TEXT_REGION 3 784 12 784 51
STRAND 19 784 25
COLOUR_TEXT_REGION 19 784 25 784 51
STRAND 30 784 36
COLOUR_TEXT_REGION 30 784 36 784 51
STRAND 72 784 82
COLOUR_TEXT_REGION 72 784 82 784 51
STRAND 85 784 93
COLOUR_TEXT_REGION 85 784 93 784 51
STRAND 99 784 103
COLOUR_TEXT_REGION 99 784 103 784 51
STRAND 121 784 122
COLOUR_TEXT_REGION 121 784 122 784 51
HELIX 39 784 49
COLOUR_TEXT_REGION 39 784 49 784 50
HELIX 59 784 68
COLOUR_TEXT_REGION 59 784 68 784 50
HELIX 108 784 116
COLOUR_TEXT_REGION 108 784 116 784 50
HELIX 124 784 130
COLOUR_TEXT_REGION 124 784 130 784 50
STRAND 3 789 12
COLOUR_TEXT_REGION 3 789 12 789 51
STRAND 19 789 25
COLOUR_TEXT_REGION 19 789 25 789 51
STRAND 30 789 36
COLOUR_TEXT_REGION 30 789 36 789 51
STRAND 72 789 82
COLOUR_TEXT_REGION 72 789 82 789 51
STRAND 85 789 93
COLOUR_TEXT_REGION 85 789 93 789 51
STRAND 99 789 103
COLOUR_TEXT_REGION 99 789 103 789 51
STRAND 120 789 122
COLOUR_TEXT_REGION 120 789 122 789 51
HELIX 39 789 48
COLOUR_TEXT_REGION 39 789 48 789 50
HELIX 59 789 68
COLOUR_TEXT_REGION 59 789 68 789 50
HELIX 108 789 116
COLOUR_TEXT_REGION 108 789 116 789 50
HELIX 124 789 130
COLOUR_TEXT_REGION 124 789 130 789 50
STRAND 3 790 13
COLOUR_TEXT_REGION 3 790 13 790 51
STRAND 19 790 25
COLOUR_TEXT_REGION 19 790 25 790 51
STRAND 30 790 35
COLOUR_TEXT_REGION 30 790 35 790 51
STRAND 72 790 82
COLOUR_TEXT_REGION 72 790 82 790 51
STRAND 85 790 93
COLOUR_TEXT_REGION 85 790 93 790 51
STRAND 98 790 103
COLOUR_TEXT_REGION 98 790 103 790 51
HELIX 38 790 49
COLOUR_TEXT_REGION 38 790 49 790 50
HELIX 58 790 68
COLOUR_TEXT_REGION 58 790 68 790 50
HELIX 108 790 116
COLOUR_TEXT_REGION 108 790 116 790 50
HELIX 124 790 129
COLOUR_TEXT_REGION 124 790 129 790 50